BAC Information

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BAC

Clone NameMSMg01-138L11
Chromosome12 (Build37)
Map Location 121,221,480 - 121,222,016
singlet/doubletsinglet
Overlap geneGm528
Upstream geneItgb8, EG627557, LOC100043011, 4732474O15Rik, LOC668632, LOC668633, LOC100043017
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-138L11.T7 (MSMg01no138_l11.b1)MSMg01-138L11.TJ (MSMg01no138_l11.g1)
ACCAG344313AG344314
length1,665704
length of high quality
(start - end)
---537 (83 - 619)
definitionCHROMAT_FILE: MSMg01no138_l11.b1 PHD_FILE: MSMg01no138_l11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:55:50 2005CHROMAT_FILE: MSMg01no138_l11.g1 PHD_FILE: MSMg01no138_l11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:55:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNTTTTTTTTTTTTTTTNNNNNNNNTNNTTTTTTTTTNNNTTTNTTTTTT
TNNNTNNTCTNTTTTTTTTTTTNTNNNTTCTTTTTTTCTTTNCTTTTTTC
TTTTTNGGTNNNTCTTTTNCTTNNCTTTTTTTTAANNATTTTTTTTCTCA
CATATATTTATATTANNCCTTACATACACCCAATACTACCTCCCCTCCGC
AATCACTACCTATATATATACCCCACTAATATATCACGACATNCAACTAA
AACATATTNCAAATAACTTACATCTGTGCAACGCGCACCTGGNCTAGCCG
CCGATATANGATCGAGTTNGTCGGCGACCGCAGGCACATTTATGTGCGCG
AGGACTNATATGCGCGCGACCGCTTACGCTTCGAGCTACGCCTCATTATC
GACTGAGTATTATTCTTTATGCATTNGTCGACAATGCGTGCCTCAGCGCG
TGTGTTAACAGTGACTCTATGGCTATATAGTATCCGCGATGTGTGATACA
CNACCCCANGTTNACNGCTGATAATGTTCTCTGTAGCGTGTCTACTACTT
ATTCTCTACCACGTTGTGCTTGTAATCACACATCATCTCATTCTACACAC
ATATTCGACGCATAACACACTCAGCACACATATTGATACACTTAATACCC
ACTACACTCATCACGTCTACACCTAGTTCATCAACGGACGCGATCTCCAT
CTGTCATTACGCTATACTCACAACATGATCATCTCTCTACATTACTCACA
ACACACCACACACAGTGTGTTCATATATGCGACATGCGACGACAGCGTTG
ATGCCGTAGGGATGGGNGCCGCACACACCGATATATGTAGTGCGAATGTG
TCGANCNGGAGGTAGATAAGATGATGAGTGAGTATGTCATGTCTGGCCAT
CNGGCGAGTCGGANATGCAGCGTGAGAGTACGATGGAGTCGACGTGCTGC
TGTAGTTGCACGTATGTGCCGCGAGGCTGGATTGAGTGTACGATGCATGG
GTGTCTGACTGAGCGCCGACACGTGCTAGTAGATANTGCGAGTGNCGAGA
CGATGCGTCCGTGACGTACAGGATATGCTATATAGTCAGCAGCGGCAAGT
GACGTGANGCACGCGGTCTATGACCGTAGAGTAACCGAACGAGANGNAGT
CGATGCAGAGCATANAGCGCTATGATATGAGTCGCGGCCNATACTCGTTG
TATGAACACTACGAGCANACGTATGGACACACGAAGAGCGCGGACTAGNA
GAATAGANTGGCAGTCGCGTGATGTAGCGACGATCTCGCAGANTGCGACA
CGTCGACGAGGCGATAGAGTGATGTTTGTCTGCACGCGACTGCACACGCC
CACCATATAGACTACACGCACAAGACGCTCATGATATATGATGACCGGAC
ACATGATATCGATGTATAGNAATCGCTGACTCTACCGACGACCACGATAC
GCTAGTACGCTATCGGCACGNCTGAATGTGTACGATATCATTACCCTGAG
ACGCGCACGCGATCGCTGTTGTAATNACGCTGCTGTACTCAGCATGGCAT
CGAGCCGCCCNGATCGACACGTCTGACGGTGTCTCTAGCGACGCACGGCA
CGAGCACGACACGCANCGATGTGACAGCGGGCGCAGACCGCGCACTCGTG
AGGAGCTCGACATAN
TTCCCCNNCCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAAAGACTAGATTTGACC
TCACAGTAGCTTGTGTTCTCTTACAGTAAATAATCTTCCTTTTATTGGAA
ATGTTTAAGGGAAGTACAAATGGTCACTTGTTAGGGTATAGAAGAGTATG
ACGGGATAATTCTGACATGAAGTTGGAATAGAATCCTATAAGATATACTG
AGCTGGAGGCTCAATTTTCGAAGAATTAGAGTTCAGAGATCTACATGTGG
TATTGTGCAATTTATTTTAGATGAAACAGAAGATATTTTATATTCCTGTA
ATAGAAAAAGTTCCTGTTCTAGGACCTTATTGTTATGATCTTAAATTAGT
CAAGAATTTATCAGTGTATAGATGTATTGATGAATTGAAACTTGTTTAAT
GCCAGATTTAGCACAACTGAAGACTGTAACATTATTTGTACCTAAACTTA
TTCAGTAAGAATAATTCTTCTAGTTAATATTGCATATACTTGTATAATTT
ACACCTACATATAGATTTTGTATTTAGACTATATTCTATAAATATTAATT
GATATCCTATATAATAATACAGTTACAGAAACGAAAAGTAGGCTTTATTG
CTTTGATTGAGAACTGCTCAGGAAGAAATTTTAGTGACCTAACATAGACG
TAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no138_l11.g1 MSMg01no138_l11.g1 CHROMAT_FILE:
MSMg01no138_l11.g1 PHD_FILE: MSMg01no138_l11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:55:50 2005
         (537 letters)



>mm_chr12_121221280_121222216
          Length = 937

 Score = 1023 bits (529), Expect = 0.0
 Identities = 535/537 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   taaagactagatttgacctcacagtagcttgtgttctcttacagtaaataatcttccttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 taaagactagatttgacctcacagtagcttgtgttctcttacagtaaataatcttccttt 678

                                                                       
Query: 61  tattggaaatgtttaagggaagtacaaatggtcacttgttagggtatagaagagtatgac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 tattggaaatgtttaagggaagtacaaatggtcacttgttagggtatagaagagtatgac 618

                                                                       
Query: 121 gggataattctgacatgaagttggaatagaatcctataagatatactgagctggaggctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 gggataattctgacatgaagttggaatagaatcctataagatatactgagctggaggctc 558

                                                                       
Query: 181 aattttcgaagaattagagttcagagatctacatgtggtattgtgcaatttattttagat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 aattttcgaagaattagagttcagagatctacatgtggtattgtgcaatttattttagat 498

                                                                       
Query: 241 gaaacagaagatattttatattcctgtaatagaaaaagttcctgttctaggaccttattg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 gaaacagaagatattttatattcctgtaatagaaaaagttcctgttctaggaccttattg 438

                                                                       
Query: 301 ttatgatcttaaattagtcaagaatttatcagtgtatagatgtattgatgaattgaaact 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 ttatgatcttaaattagtcaagaatttatcagtgtatagatgtattgatgaattgaaact 378

                                                                       
Query: 361 tgtttaatgccagatttagcacaactgaagactgtaacattatttgtacctaaacttatt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 tgtttaatgccagatttagcacaactgaagactgtaacattatttgtacctaaacttatt 318

                                                                       
Query: 421 cagtaagaataattcttctagttaatattgcatatacttgtataatttacacctacatat 480
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 317 cagtaagaataattcttctagttcatattgcatatacttgtataatttacacctacatat 258

                                                                    
Query: 481 agattttgtatttagactatattctataaatattaattgatatcctatataataata 537
           |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 agattttgtacttagactatattctataaatattaattgatatcctatataataata 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 537
Length of database: 937
Length adjustment: 10
Effective length of query: 527
Effective length of database: 927
Effective search space:   488529
Effective search space used:   488529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)