GGATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCACTATGCACGACCAGGCAGGGCTTGAACTCACAGAGATCCA
CCTGCCTCTGCTTCCCAAGTGCAGAGATTATTAAAAGCGCATGCCACCAT
GTCCAGCCTCATTGCACTTGGTTTTAATTCTTTCCTGTGCGTGTATGTGG
GGGGAGGGGGGAGGNACTNNNNCNNNNNNTCNNCCCCCCTCNTCCCCTTT
CTTCTTTCCCCTTTTCCTCTCCCCCCCTTCCCCCCTCTTCTTCCCTCCCC
GCCCTTTTTTTTTTTTTCTCCCCTCCCCCTTTCCCTCCCCCTTCCTTTTC
CCACTCCCCCCCCCTTTTCCATTATCCACTCACTCCCCCCTTAACCCTCC
CCTTTGTCCCCCCATCTCCCCTAAATAAATTCCCCCCCTCTAAATTCCCC
TACCCCTATATCCTACCCCCCCTTTTTCCCCTTTCTTTTCCCCTTTCCCC
TCCCCCACTTTTTTTTTCCAATTCTTTCCCTTTACCCCACCCCCTCCCAA
CCTCTCCCCCATTTTTATTTCCCTCTTCTCCCCCCTTTTTTTTTTATTTC
CCATTCCCCCTCATTCTCCACCCTCCCTTTCTTTCCCCCCTCAAATTTTA
ATATCACCTCATTTCCCCCCTTATTACCTAACACCCCCCCCTTACCCCCC
CTATTCCCACCCTACCCCTTTTTTCTACAC

NCCGAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAACACAGGTAAAAAGTATACTGC
AATCAATACGAGGCATTTCAGAGTGAAATCAGTAATTTAGGATAAAAAGC
AAAGAGAAAGATGATTTAAAACAAAACAAAACAAAAAAAGTAGACACACT
ACTTACTAATCACTAGAAATATCAACCAAACAAAACCAAACCAAACCGAA
CCGAACCGAACCGAACCGAAACAAAACAAAACAAAACAAAACAAAACAAA
ACAAAACAAAACAAAACAAAACAAAACAAATGACTTTGAGAACAAGGGAA
TGTAAAGACATTTTGTTAGGAATTTAAAAAAAATTACTGAGAGAAACTAA
ATATGAAAACTAATTTAAGGATATATTTTGAAGAAAAACATGAATGTTCA
TATGGACAGCAGAGAAATATGTAATAATAAAATAGTGAAATCACTCAAAT
AAATGTGTAACTTCATACATTCATATATACATACATATATATCAACTATA
TAGATGAATATAGTATATTAAAAAAACTGTATTTGTTTAGTTGCAGCATA
ATAACATTTGTAGAAAGAACTTACAAGTTCTAATAATTTATTTTATTTTA
TCAAACACTCAAAGTACATAATTTTTAGTTTAGGTTAAATCATAATTTGA
ATTAAATCAAG

Query= MSMg01no139_c12.g1 MSMg01no139_c12.g1 CHROMAT_FILE:
MSMg01no139_c12.g1 PHD_FILE: MSMg01no139_c12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:56:27 2005
         (635 letters)



>mm_chr12_44307971_44309005
          Length = 1035

 Score = 1125 bits (582), Expect = 0.0
 Identities = 630/660 (95%), Gaps = 25/660 (3%)
 Strand = Plus / Minus

                                                                        
Query: 1    caacacaggtaaaaagtatactgcaatcaatacgaggcatttcagagtgaaatcagtaat 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1033 caacacaggtaaaaagtatactgcaatcaatacgaggcatttcagagtgaaatcagtaat 974

                                                                        
Query: 61   ttaggataaaaagcaaagagaaagatgatttaaaacaaaacaaaacaaaaaaagtagaca 120
            |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 973  ttaggataaaaagcaaagagaaaggtgatttaaaacaaaacaaaacaaaaaaagtagaca 914

                                                                        
Query: 121  cactacttactaatcactagaaatatcaaccaaacaaaaccaaacc--a---aaccgaac 175
            ||||||||||||||||||||||||||||||||||| ||||||||||  |   ||||||||
Sbjct: 913  cactacttactaatcactagaaatatcaaccaaaccaaaccaaaccgaaccgaaccgaac 854

                                                                        
Query: 176  cgaaccgaaccgaaccg-------------------aaa-caaaacaaaacaaaacaaaa 215
            |||||||||||||||||                   ||| |||| |||| ||||||||||
Sbjct: 853  cgaaccgaaccgaaccgaatcgaaccaaaccaaaccaaaccaaaccaaaccaaaacaaaa 794

                                                                        
Query: 216  caaaacaaaacaaaacaaaacaaaacaaaacaaaacaaatgactttgagaacaagggaat 275
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 793  caaaacaaaacaaaacaaaacaaaacaaaacaaaacaaatgactttgagaacaagggaat 734

                                                                        
Query: 276  gtaaagacattttgttaggaatttaaaaaaaattactgagagaaactaaatatgaaaact 335
            |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 733  gtaaagacattttgttaggaattttaaaaaaattactgagagaaactaaatatgaaaact 674

                                                                        
Query: 336  aatttaaggatatattttgaagaaaaacatgaatgttcatatggacagcagagaaatatg 395
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673  aatttaaggatatattttgaagaaaaacatgaatgttcatatggacagcagagaaatatg 614

                                                                        
Query: 396  taataataaaatagtgaaatcactcaaataaatgtgtaacttcatacattcatatataca 455
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613  taataataaaatagtgaaatcactcaaataaatgtgtaacttcatacattcatatataca 554

                                                                        
Query: 456  tacatatatatcaactatatagatgaatatagtatattaaaaaaactgtatttgtttagt 515
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553  tacatatatatcaactatatagatgaatatagtatattaaaaaaactgtatttgtttagt 494

                                                                        
Query: 516  tgcagcataataacatttgtagaaagaacttacaagttctaataatttattttattttat 575
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493  tgcagcataataacatttgtagaaagaacttacaagttctaataatttattttattttat 434

                                                                        
Query: 576  caaacactcaaagtacataatttttagtttaggttaaatcataatttgaattaaatcaag 635
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433  caaacactcaaagtacataatttttagtttaggttaaatcataatttgaattaaatcaag 374


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 76
Number of extensions: 13
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 1
Length of query: 635
Length of database: 1035
Length adjustment: 10
Effective length of query: 625
Effective length of database: 1025
Effective search space:   640625
Effective search space used:   640625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)