BAC Information

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BAC

Clone NameMSMg01-139L01
Chromosome12 (Build37)
Map Location 115,096,623 - 115,096,876
singlet/doubletsinglet
Overlap geneIgh
Upstream geneGpr132, Jag2, Nudt14, Brf1, Btbd6, Pacs2, Tex22, Mta1, Crip2, Crip1, 4930427A07Rik, LOC676349, Tmem121, Igh-2, Gm900, Igh-1b, Igh-3, Ighg1, AI324046, LOC668370, LOC668375, EG382645, Igh-5, Igh-6, Ighj4, Ighj3, Ighj2, Ighj1, Ighd4-1, Ighd3-2, Ighd5-6, Ighd2-8, Ighd5-5, Ighd2-7, Ighd5-8, Ighd5-4, Ighd2-6, Ighd5-7, Ighd5-3, Ighd2-5, Ighd5-2, Ighd2-4, Ighd6-2, Ighd2-3, Ighd6-1, Ighd1-1, 4930523C11Rik, Ighd3-1, Ighd5-1, Adam6, Ighv5-1, Ighv2-1, Ighv5-2, Ighv2-2, Ighv5-3, Ighv5-4, Ighv6-1, Ighv2-3, Ighv5-5, Ighv5-6, Ankrd12-like, Ighv5-7, EG668389, Ighv5-8, Ighv5-9, Ighv5-10, Ighv2-5, Ighv5-11, Ighv5-12, Ighv2-6, Ighv5-9-1, EG628098, Ighv2-9-1, Ighv5-13, Ighv2-6-8, EG629785, Ighv2-7, LOC668405, Ighv5-15, Ighv5-16
Downstream geneIghv5-17, Ighv5-18, Ighv2-8, Ighv2-9, Ighv5-19, Ighv7-1, Ighv7-2, Ighv14-1, Ighv4-1, Ighv3-1, Ighv11-1, Ighv14-2, Ighv4-2, Ighv3-2, Ighv11-2, Ighv14-3, EG629812, Ighv6-2, Ighv9-1, Ighv12-1, EG629818, Ighv12-2, Ighv9-3, Ighv7-3, Ighv15-1, Ighv14-4, EG668438, Ighv7-4, EG629833, EG633457, Ighv13-1, Ighv3-6, EG636260, Ighv3-7, Ighv5-21, Ighv3-8, Ighv8-1, Ighv1-1, Ighv13-2, EG435321, Ighv6-3, EG628398, EG639510, Ighv6-6, EG432701, EG629849, Ighv1-2, Ighv10-1, Ighv1-3, Ighv1-4, Ighv10-2, EG668469, EG380809, Ighv1-6, EG668474, Ighv10-4, Ighv1-8, Ighv15-2, Ighv1-9, Ighv1-10, Ighv1-11, EG629860, Ighv1-13, Ighv1-14, Ighv1-15, EG629866, Ighv1-17-1, Ighv1-17, Ighv1-18, EG668493, Ighv1-19, EG668497, Ighv1-21-1, Ighv1-21, Ighv1-22, Ighv1-23, Ighv1-24, Ighv1-25, Ighv1-26, Ighv1-27, Ighv1-28, Ighv1-29, Ighv1-30, Ighv1-31, Ighv1-32, Ighv1-33, Ighv1-34
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-139L01.T7 (MSMg01no139_l01.b1)MSMg01-139L01.TJ (MSMg01no139_l01.g1)
ACCAG345025AG345026
length712709
length of high quality
(start - end)
291 (48 - 338)253 (74 - 326)
definitionCHROMAT_FILE: MSMg01no139_l01.b1 PHD_FILE: MSMg01no139_l01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:57:10 2005CHROMAT_FILE: MSMg01no139_l01.g1 PHD_FILE: MSMg01no139_l01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:57:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGATAACGCGGA
ATTCTTCTTAGCTCTGCCACCCATTTTCAATAGGGTCATTTGGTTCTCTG
GAGTATACTTTTTTTATAAAAAATTTTATTAGATATTTTCTTCATTTGCA
TTTCAAATACTATCCCCAAAGTCCCCTATAACCTACCCGCTACCTCCTCC
CCAACCCACCCACTCCCACTTCTTGGCCCTGGCATTCCCCTGTACTGGGA
CATATAATCTTCCCAAGACCAAGGGCCTCTATTCCCATTGATGGCCTACT
AAGCCATTCTCTGCTACATATGCAATTAGAAATATAAGATCAGCAGTGCA
CTGTATAGTTCATATTGATGCTCCTCCTATAGCGTCACAGATCCTTTCTG
CTCCTCGCGTACTTTCTCTAGCCTCTTCAATAGGGGATCTGCGTTATAAC
CAATAGACAATTGTGAGCTTCCACCTCTGTATTTGTCAGTTACCGTTATA
CTTTACCACGAGACAGCTACATTATGCCCCTGTTCACTCCAATCCTGCTG
GAATACGTAATACTGTCTGGCCTAGCCCGATCGTCTCCGTATACGCCCTA
TTGCCTCCGATTCCCCAACCCTACGCCCCTTCCCATCCCTCACCTCTCAT
TTTTTTTATTCCCCCTCCCTCCTCCCCCCCCTACTCCTTCCTTTTATCCA
CCTTATCCAAAT
CGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTGCTTCTTCCTGGTCTGATACAGAA
TCTCTTCTGCCCTGTATGGTGCTCTGCATTTTGTGTTTACGTCAGTGGTT
ATACTACATTTAAAGGTCATCAATAATGGGGCTGTTTATATCCCTCTGTG
CATCAGCTTCTTACCACATGAGGGTGAGCTTAGTTCTACACAACGATAAA
AGGAGGTGGGTTTGGTAGCGTAAGATCCAGGCCCAAGATGGACTATATTT
CAATGCTATTGTGTAGACTGATATAAGTAATCTGGTCTCAACATGTGCGC
ACAGACAGATGGACATACAGACAGACACTCATACTCACACAGACATTCAT
ACTCACTTTTTGACAGAGAGACACAGACAGAGATAGAGATTGATAGAGCT
CCGCCTTGAGACAGAGTAACATAAACAGAGCGACATATAGATAGAGAGAC
CCTGTAAACACCGAGATAGACATTTTGTAATAAGTACCTGAGCACATTAT
TTGCTTTACCCAGGAAACGACCAATTTGAATAAACTTTTACGAAAGTCAA
TGATACTACCCCTCTTTCTATGCATAGAGAATTCCTTTAGCGAGGTCACG
CCATATCCGAGGAGTGTCATTCTTCCCTTTCCTCCCCGTTTTTTTTCCTC
ATTTTGTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no139_l01.g1 MSMg01no139_l01.g1 CHROMAT_FILE:
MSMg01no139_l01.g1 PHD_FILE: MSMg01no139_l01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:57:10 2005
         (253 letters)



>mm_chr12_115096423_115097076
          Length = 654

 Score =  468 bits (242), Expect = e-136
 Identities = 251/254 (98%), Gaps = 1/254 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttgcttcttcctggtctg-atacagaatctcttctgccctgtatggtgctctgcatttt 59
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttgcttcttcctggtctgcatacagaatctcttctgccctgtatggtgctctgcatttt 260

                                                                       
Query: 60  gtgtttacgtcagtggttatactacatttaaaggtcatcaataatggggctgtttatatc 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgtttacgtcagtggttatactacatttaaaggtcatcaataatggggctgtttatatc 320

                                                                       
Query: 120 cctctgtgcatcagcttcttaccacatgagggtgagcttagttctacacaacgataaaag 179
           ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 321 cctctgtgcatcaacttcttaccacatgagggtgagcttagttctacacaacgacaaaag 380

                                                                       
Query: 180 gaggtgggtttggtagcgtaagatccaggcccaagatggactatatttcaatgctattgt 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaggtgggtttggtagcgtaagatccaggcccaagatggactatatttcaatgctattgt 440

                         
Query: 240 gtagactgatataa 253
           ||||||||||||||
Sbjct: 441 gtagactgatataa 454


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 253
Length of database: 654
Length adjustment: 9
Effective length of query: 244
Effective length of database: 645
Effective search space:   157380
Effective search space used:   157380
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)