Query= MSMg01no140_d23.b1 MSMg01no140_d23.b1 CHROMAT_FILE:
MSMg01no140_d23.b1 PHD_FILE: MSMg01no140_d23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:57:55 2005
(666 letters)
>mm_chr12_15283743_15284809
Length = 1067
Score = 1048 bits (542), Expect = 0.0
Identities = 621/674 (92%), Gaps = 44/674 (6%)
Strand = Plus / Minus
Query: 4 gaattcatgtactcttccagctttaggcaatgataatatttggcaccatattaacttttg 63
|||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 910 gaattcatgtactcagctagctttaggcaatgataatatttagcaccatattaacttttg 851
Query: 64 gaaaccttggtgtcagtactaattatacctccgagcagagccatggattcatggtctgca 123
| |||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct: 850 ggaaccttggtgtcagtactaattatacctccaagcagagccatagattcatggtctgca 791
Query: 124 aaattctagaacttcacagacacagaaagctgtgtggtaataatg----------ttttt 173
||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 790 aaattctagaacttcacagacacagaaagctgtgtggtaataatgttttttttttttttt 731
Query: 174 tttccccttgggaactctgtaggcaaatggaaattgatcaaaacatttttgttgtcacaa 233
||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 ttt---cttgagaactctgtaggcaaatggaaattgatcaaaacatttttgttgtcacaa 674
Query: 234 aaacgatcaagggattaaaagat-aaaagcatcttccattttctttttctctatgagacc 292
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 673 aaacgatcaagggattaaaagataaaaagcatcttccattttctttttctctatgagacc 614
Query: 293 atattcaagatatatttatattctacaaataagaaccatttctataaatgtttcactatg 352
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 613 atattcaagatatatttatattctacaaataagagccatttctataaatgtttcactatg 554
Query: 353 attaggttatcctagaccctatgtatttgtatatcagtacttaaatttgaatcagttcat 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 attaggttatcctagaccctatgtatttgtatatcagtacttaaatttgaatcagttcat 494
Query: 413 gaagccaatttcttttagattccttagaatgtctaacatactacatatagcttatttatg 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 gaagccaatttcttttagattccttagaatgtctaacatactacatatagcttatttatg 434
Query: 473 actatgcattgtgacaaaagcatagcattggggaaaaccttaacaactttatgtacacac 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 actatgcattgtgacaaaagcatagcattggggaaaaccttaacaactttatgtacacac 374
Query: 533 acacacacacatacacacacacacacacacacacacacacacacacacacacacacacac 592
||||||||||| |||||||||||||||||||
Sbjct: 373 acacacacaca------------------------------cacacacacacacacacac 344
Query: 593 ctcatcatcacttacctctgctcaaacatgataaggataaagaaaaaaactttcaacagt 652
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 ctcatcatcacttacctctgctcaaacatgataaggataaagaaaaaaactttcaacagt 284
Query: 653 tgacttctacaaga 666
||||||||||||||
Sbjct: 283 tgacttctacaaga 270
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 54
Number of extensions: 18
Number of successful extensions: 18
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 1
Length of query: 666
Length of database: 1067
Length adjustment: 10
Effective length of query: 656
Effective length of database: 1057
Effective search space: 693392
Effective search space used: 693392
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no140_d23.g1 MSMg01no140_d23.g1 CHROMAT_FILE:
MSMg01no140_d23.g1 PHD_FILE: MSMg01no140_d23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:57:55 2005
(635 letters)
>mm_chr12_15125608_15126642
Length = 1035
Score = 1143 bits (591), Expect = 0.0
Identities = 624/635 (98%)
Strand = Plus / Plus
Query: 1 aggaagtgagaacatatcatgagcattgctgtgtgcatctatattacagtcagggtggca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggaagtgagaacatatcatgagcattgctgtgtgcatctatattacagtcagggtggca 260
Query: 61 atgagcatacaggtatgatcattcaacttgatttctgccccatgtttgatgtctcttatt 120
|||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 261 atgaacatacaggtatgatcattcaacttgatttctgcaccatgtttgatgtctcttatt 320
Query: 121 cccttccaatgatctatttgtttttcctttctactgcatggtatgtgcttcagatgcata 180
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cccttccagtgatctatttgtttttcctttctactgcatggtatgtgcttcagatgcata 380
Query: 181 cagttacattttatatgcaagtaaagtatggtaaaagcagacagtccttgaaccaccagg 240
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 381 cagttatattttatatgcaagtaaagtatggtaaaaacagacagtccttgaaccaccagg 440
Query: 241 aaaaattttatctcccattagggtgactcagtggctaagtataaacacaatcagtagcca 300
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||
Sbjct: 441 aaaaattttatctcccattagggtgactcagtggctaagtgtaaacccaatcagtggcca 500
Query: 301 ccaaaccatccctggaccaatgacttctaggtccctcatctcacaaagtccagaaataat 360
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccaaaccctccctggaccaatgacttctaggtccctcatctcacaaagtccagaaataat 560
Query: 361 ttcacagagagtgagttttggaagagttttattatagagggaaagcaagcagaacttcta 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 561 ttcacagagagtgagttttggaagagttttattatagagggaaagcaagcagaacttcca 620
Query: 421 aactgcaagaggggccctacaaagttattttcacttccatctctaagcaacaagggcttg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aactgcaagaggggccctacaaagttattttcacttccatctctaagcaacaagggcttg 680
Query: 481 aatctgcctaaagaagattgaaacttctatgacatcttcaacgactgggactattgttgt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aatctgcctaaagaagattgaaacttctatgacatcttcaacgactgggactattgttgt 740
Query: 541 gaaaattgtcattattgaaataggccattgataaatgatttagtcaaagaggtcacacag 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gaaaattgtcattattgaaataggccattgataaatgatttagtcaaagaggtcacacag 800
Query: 601 ccaaaactgatgaaataaacatttaattatttcag 635
||||||||||||||||||||||||||||||||||
Sbjct: 801 tcaaaactgatgaaataaacatttaattatttcag 835
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 635
Length of database: 1035
Length adjustment: 10
Effective length of query: 625
Effective length of database: 1025
Effective search space: 640625
Effective search space used: 640625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
