BAC Information

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BAC

Clone NameMSMg01-141F02
Chromosome12 (Build37)
Map Location 83,980,928 - 84,083,409
singlet/doubletdoublet
Overlap geneRgs6
Upstream genePcnx, Sipa1l1, LOC432675, EG666911
Downstream geneDpf3, Wdr21, Zfyve1, LOC626950, Rbm25, Psen1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-141F02.T7 (MSMg01no141_f02.b1)MSMg01-141F02.TJ (MSMg01no141_f02.g1)
ACCAG346220AG346221
length1,1611,212
length of high quality
(start - end)		762 (89 - 850)628 (90 - 717)
definitionCHROMAT_FILE: MSMg01no141_f02.b1 PHD_FILE: MSMg01no141_f02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:59:34 2005CHROMAT_FILE: MSMg01no141_f02.g1 PHD_FILE: MSMg01no141_f02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:59:35 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,082,648 - 84,083,409)(83,980,928 - 83,981,555)
sequence
NCAATCTTTNNNNNGTCAGTGGGCGCTAAGACTCCTAAGGGAGAGGATCC
GCGGAATTCCCAGAATTTATAAGACCGCTTTTAGGACCTTATAAAAGCAC
TGAGAAGCGCGGTCAAATCTCTTGAACAGATTTCTAACTTGTTTCTCCAT
CTTAAAAGTTCTGTAGTAAAGATGTCAGCATGGAGACCCAGAAGGCCTCA
GAGCTGGTGTGTAACAAAGCTGTAATTCCTACCCAAGTCTTCCTGAATGC
AGTATGTCATCAGAATCTATCAAATAGTAACTTTTCTGCACTCTCAGATC
AGCAGAAATCTTAGCTACCACCCTTCTTCACCTCCCTGGGGATGGGGGAG
ACAGAAACTGGCTGATATTTTCCTGACGGTTCAGTTTCATCTCACTTTGA
CACCTTGTGTTCCCAGGGAACAACACAGTAAGTTCCCTGACATCCTTTGA
TGTGAAGACCCATGTCTTAGTGAACATGTTTGGCTCTACGTGCCCTGTGC
CAATCAAGAAGCAGGTGGCCCCAATCTGACAGCCAGGTGAAGCAGAGAAA
TCATTTGGCCAGCTTGGTTGGTTCTGCCTGGGTGAGCCTCAGTAATAAGG
GCGCTCTTCTACAAGGAGCTCAGCACCCAGCACAGGTACAGGGATCCTCC
AAATAACAGAATGACAGCAGCCATTACACTACCCACTGGGATTTCTTTTA
CATAAGCAATAGACATGATTCACTGAATTAGTGCTGAGCAAGAGGGAGGA
AGAGTGATCATTTTTTTAGAAATGGAAGCCTCCTTGAGATCACATGACTG
GACTGTGGTTTAGAGAAGTTTGCAGCTTCTTCAAAGTGTTCCGCTTCTTT
AGGGACGTCACTACCCTGTCTCTGCAGTGATATGTGCATTTACTGAGTGG
ATAACCCAGTTTGAAAATATGAGAGGCTGGCTGCTTTGATCTTGCCCATG
AAAAACTGTGTCTGAGGGGTGAAAGCATCCCCGTTTGAAGGAAGGTTGGG
GTAATAAGTTTTCATTCTCCCTTTTTCTCTTTCTTTTTTTTCTTTCTTTT
TTTTCTTTTCTCTTCTATTCGTTTTTCCTTTTTCCTTCTTTTTTCTTTTT
TCTTTTTCTTTTTTTCTTCTTTCTTATACTCATCCTCCTTCTCTCCTTCT
TTTTTTTTCTA

CCAGTTTTTTNNNTAAGATGTGAGCCTGGGGCGCCXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTCTTGAAGTTCCAAGAGGCCTTG
CATAGGCAGAAAGCTAAGAGATATGCAAAGTCTCTGGACGACTTAGGCTA
GATAGAGAACCCTGCTAGGGAGCTGCTGCTAGAGTCTCAGCTGTTCAAGC
CACCATGTGTTGAAGTTAGTACTGCCTCCCAGCCCCATGCTCCAGGAAAT
AAGACTGAGACTCAAAATATATTTACAAGTACCTTGGCCATATAGCAAGG
CACTACTCTGACTAGATCATAACTAAAGATAACCCATTTGTTTTAACCCT
CATCCTGCCTTGTGGCTGGTCACTTGTTCTCAGGTACCATGGGTCAGTCT
TGTCACATCTTCCTGGCCAATCTCCTTCCTGGCTCTATCTCAGAATTCTC
CTGGAAGCCCCATCTTCTATTTCCTGCCCCAAGCCATAGGCTTTTTAATT
GACAGGTGATGCATCCATACAACATAAGGTATTCTCTCTACAACTGTGTC
AGAACTGAGCCTAGCCTTGGGGTTGAGTTAAGCTATTAAAGCGTGATGTG
AAGCCATAAGGGGAAATACCAGGGCTAGAAGGACAGATGATCAACAATTT
GAATAGCCCACATGAGCAGTGGGGAGCTAAGCAAGAAAGCATGCCTGGTA
CAGTTGTGAATTCTGCCTGTTAGTAGCCAGGTGTCAGGTCGGTAGAGCCA
CTGCCGCTGAGGTATTGATGACCTCCTTCTTATGCAACCCTGCTCAAGCA
GTCGAACTCCGCCACCGGCCTGATGTATTCTACAAACCCTGGTCCCTGCC
TCTCTAGGGTCCCATCCTGAATACCTGTCTTGTCCCTCCACCCCATCACT
CTTTTTTCTCGTCCCTCCCTCACTCCCTCCCTATCTACCTCTCATTGCTT
TTTCCCTTTCCTCTCACCTCTTTTCCTTTCCACCTTCTCTTTTCTCTTCC
TTTCTTTTCGCCCCCCCATTCCTCTTTTTTTCCCTCCTTCCCTCCTTTCT
CCTTTTCTTCTTTCTCTCTCTTCTCTTTTTTCCCCCCTCTACTTCTCCTT
CCTTCTCTTTTTCCCTCTTTCTTTCTCTCTTTCCTCACTTCTATCTCCCT
CCCNTCTTCCTCCCTCTCTCTCTCACTCTCTCTCTTTAACTATCCCCTAT
ATCTACTCTCAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no141_f02.b1 MSMg01no141_f02.b1 CHROMAT_FILE:
MSMg01no141_f02.b1 PHD_FILE: MSMg01no141_f02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:59:34 2005
         (762 letters)



>mm_chr12_84082448_84083609
          Length = 1162

 Score = 1388 bits (718), Expect = 0.0
 Identities = 751/762 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttataaaagcactgagaagcgcggtcaaatctcttgaacagatttctaacttgtttctcc 60
           ||||||||||||||||||| |||||||||| |||||||||||||||||| ||||||||||
Sbjct: 962 ttataaaagcactgagaagtgcggtcaaatatcttgaacagatttctaatttgtttctcc 903

                                                                       
Query: 61  atcttaaaagttctgtagtaaagatgtcagcatggagacccagaaggcctcagagctggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 902 atcttaaaagttctgtagtaaagatgtcagcatggagacccagaaggcctcagagctggt 843

                                                                       
Query: 121 gtgtaacaaagctgtaattcctacccaagtcttcctgaatgcagtatgtcatcagaatct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 842 gtgtaacaaagctgtaattcctacccaagtcttcctgaatgcagtatgtcatcagaatct 783

                                                                       
Query: 181 atcaaatagtaacttttctgcactctcagatcagcagaaatcttagctaccacccttctt 240
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 782 atcaaatagtaacttttctgccctctcagatcagcagaaatcttagctaccacccttctt 723

                                                                       
Query: 241 cacctccctggggatgggggagacagaaactggctgatattttcctgacggttcagtttc 300
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 722 cacctccctggggatgggggagacagaaactggcttatattttcctgacggttcagtttc 663

                                                                       
Query: 301 atctcactttgacaccttgtgttcccagggaacaacacagtaagttccctgacatccttt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 atctcactttgacaccttgtgttcccagggaacaacacagtaagttccctgacatccttt 603

                                                                       
Query: 361 gatgtgaagacccatgtcttagtgaacatgtttggctctacgtgccctgtgccaatcaag 420
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 602 gatgtgaagacccatgtcttagtgaacatgtttggccctacgtgccctgtgccaatcaag 543

                                                                       
Query: 421 aagcaggtggccccaatctgacagccaggtgaagcagagaaatcatttggccagcttggt 480
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 gagcaggtggccccaatctgacagccaggtgaagcagagaaatcatttggccagcttggt 483

                                                                       
Query: 481 tggttctgcctgggtgagcctcagtaataagggcgctcttctacaaggagctcagcaccc 540
           ||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct: 482 tggttctgcctgggtgagcctcagtaataagggtgctcttctacaaggagcttagcaccc 423

                                                                       
Query: 541 agcacaggtacagggatcctccaaataacagaatgacagcagccattacactacccactg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 agcacaggtacagggatcctccaaataacagaatgacagcagccattacactacccactg 363

                                                                       
Query: 601 ggatttcttttacataagcaatagacatgattcactgaattagtgctgagcaagagggag 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 362 ggatttcttttacataagcaatagacatgattcactgaattagtgctgagcaaaagggag 303

                                                                       
Query: 661 gaagagtgatcatttttttagaaatggaagcctccttgagatcacatgactggactgtgg 720
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 gaagagtgatcatctttttagaaatggaagcctccttgagatcacatgactggactgtgg 243

                                                     
Query: 721 tttagagaagtttgcagcttcttcaaagtgttccgcttcttt 762
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 tttagagaagtttgcagcttcttcaaagtgttccgcttcttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 762
Length of database: 1162
Length adjustment: 10
Effective length of query: 752
Effective length of database: 1152
Effective search space:   866304
Effective search space used:   866304
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)

Query= MSMg01no141_f02.g1 MSMg01no141_f02.g1 CHROMAT_FILE:
MSMg01no141_f02.g1 PHD_FILE: MSMg01no141_f02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:59:35 2005
         (628 letters)



>mm_chr12_83980728_83981755
          Length = 1028

 Score = 1168 bits (604), Expect = 0.0
 Identities = 622/628 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagaggccttgcataggcagaaagctaagagatatgcaaagtctctggacgacttaggct 60
           ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 aagaggctttgcataggcagaaagctaagagatatgcaaagtctctggaggacttaggct 260

                                                                       
Query: 61  agatagagaaccctgctagggagctgctgctagagtctcagctgttcaagccaccatgtg 120
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 261 agatagagaaccctgctagggagcttctgctagagtctcagctgttcaagccaccatgtg 320

                                                                       
Query: 121 ttgaagttagtactgcctcccagccccatgctccaggaaataagactgagactcaaaata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgaagttagtactgcctcccagccccatgctccaggaaataagactgagactcaaaata 380

                                                                       
Query: 181 tatttacaagtaccttggccatatagcaaggcactactctgactagatcataactaaaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tatttacaagtaccttggccatatagcaaggcactactctgactagatcataactaaaga 440

                                                                       
Query: 241 taacccatttgttttaaccctcatcctgccttgtggctggtcacttgttctcaggtacca 300
           |||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct: 441 taacccatttgttttaaccctcattctgccttgtggctggtcacttgtgctcaggtacca 500

                                                                       
Query: 301 tgggtcagtcttgtcacatcttcctggccaatctccttcctggctctatctcagaattct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgggtcagtcttgtcacatcttcctggccaatctccttcctggctctatctcagaattct 560

                                                                       
Query: 361 cctggaagccccatcttctatttcctgccccaagccataggctttttaattgacaggtga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cctggaagccccatcttctatttcctgccccaagccataggctttttaattgacaggtga 620

                                                                       
Query: 421 tgcatccatacaacataaggtattctctctacaactgtgtcagaactgagcctagccttg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgcatccatacaacataaggtattctctctacaactgtgtcagaactgagcctagccttg 680

                                                                       
Query: 481 gggttgagttaagctattaaagcgtgatgtgaagccataaggggaaataccagggctaga 540
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 681 gggttgagttaagctattaaagcgtgatgtgaagccataaggggaagtaccagggctaga 740

                                                                       
Query: 541 aggacagatgatcaacaatttgaatagcccacatgagcagtggggagctaagcaagaaag 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aggacagatgatcaacaatttgaatagcccacatgagcagtggggagctaagcaagaaag 800

                                       
Query: 601 catgcctggtacagttgtgaattctgcc 628
           ||||||||||||||||||||||||||||
Sbjct: 801 catgcctggtacagttgtgaattctgcc 828


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 628
Length of database: 1028
Length adjustment: 10
Effective length of query: 618
Effective length of database: 1018
Effective search space:   629124
Effective search space used:   629124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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