BAC Information

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BAC

Clone NameMSMg01-141G24
Chromosome12 (Build37)
Map Location 66,097,221 - 66,097,879
singlet/doubletsinglet
Overlap geneA430041B07Rik
Upstream geneEG623046, LOC623123, LOC217645, LOC217647, Gm527, Klhl28
Downstream genePrpf39, Fkbp3, Fancm, C79407, Wdr20b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-141G24.T7 (MSMg01no141_g24.b1)MSMg01-141G24.TJ (MSMg01no141_g24.g1)
ACCAG346310AG346311
length1,2201,184
length of high quality
(start - end)
609 (89 - 697)658 (129 - 786)
definitionCHROMAT_FILE: MSMg01no141_g24.b1 PHD_FILE: MSMg01no141_g24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:59:50 2005CHROMAT_FILE: MSMg01no141_g24.g1 PHD_FILE: MSMg01no141_g24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:59:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCCGATCTTNNNNNCACACTGGGCGCAXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCATGCCCTGGTGAAGACCTTTTAAGCAAGAGCCAAGGGAT
AAGCAGCCAATTCTTGCTCCTATAGCAAAACAATTGACACAAACTCCTTT
TAAACTGGAAGCAGTTGGAACTTACTGTTTTTGAAAATCCCCAGCCTTTC
TAGATGACAAAACATACTAAAATTACGAGATCTTCCATTCAAACATCAAA
TCCAGGAGCTACCCAGGCCAACATGAAGCTGAGAGTCTGACAGCAAAACT
TTGGGAAAGACCTCCAGAAGGTCAAAGGTGACACACAGCATGGTACCCAG
CAGGCAGACAAAAGGCACCTGTGTTTTTATGGGATGCTCCCCAGTGGGGC
TTAAAGAATTATCTTCCAGTATCTCAGCAGAATGTCAAAGTAGAGAGCAG
GGCTTTTGTTCACAAGGATTTGTGAACAGGAAATGTGATGAAGCTCTCTC
AGAGAAGATCCACCAGAAATCCATTCCTGATGATTGCTTAAGATTTCTCA
GGGTTGTAAATTCAGAAATACAAAAACAAAAACAAAAACAAAAACAAAAC
AAAACAAAACAAGCACGCCCTCGTGAGGCAGAGGCAGGTGGATTTCTGAG
TTCAAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGNGCTAC
ACAGAGAAACCCTGTCTCAAAAAAACAAAAAACAAAATACAAAAAACTTA
TTACCTATTAAAAATTAAATAGAAGAAGAAATGCCCCGAGTTACAGTGAA
GGCTTTATATGCTCATGTGTACATCTGCAGTGTTGGGGAATGAACCTACA
GTCCCGGCATTATGTCCCACAAACCTCCCTCAACCTTATATCCTGAAAAA
CATGTAGAATCAGCCCCAGGCCCCAAATCCTTAATGTCATAACCTCCCAG
TGGGCCAGTTATCATAGGGCCTCAAATAATTCTCGGTTTATTTCCAGTCC
CACTACCTCCCTTAATTTATCCTGGTTGAATTTAATCCCTTCCCCCTTGC
TTCTGAATCTTAAACACTACTTTCTGTCTATAAAATACCTGGTCTATTAT
TTGATGTGCATTATCCCTACATCTATTAATATCTCTCAATTTTGTCTTTT
CTCTTTATTTAATTCTTTCTATTGCTGCCCCCAATTGTCAAATTCATTTC
TCCTTTAACTCTCTCTTTAT
NCCCCTTCTTNTNNNAAATCAAGGNAGCCXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCCTTTAAATCCATCTCCCAC
CTTGTAGAAGAACGAGAAGTATCCCTCTATACCTGGCTTCACTTGTGTTC
TACAATTTTAAGTTCGGCAAACTTGAACAGTGTATATACTTTTTATAAAC
AGAACTGTCTCCCCAGCCCCTTGATTTATATTTTTAATATTTTAGGTAAT
TGAAATTTCTGATTTTTAATCACTTAAATTTCTGATATATAGTATGCTTT
TATGCTACACTTATGGTTTATATAATATGGTTGTGCATATATATATTCAA
CAGTTTATGAGTATCTTCAAACACTGACAGATTGATATCCTTAAGCATGA
ATTTAATTAAATATTAGTACTATATAATTCTGTCAGATCTTAGTTCTAAA
ATAAGGATTTAAAAACACGTAGTTGGTCCAGGATCAATAATGTGTACCTA
TAATCTTAGCATGTTAGGAGAAAGAGGCAGGAAAATCATGAGTTCAAAGT
GTTCGGACTGCATAGAGAGGGAAAAGCCAACCTGGGCTATGTGAGATCCT
GTCTCAAAACAGCATAGTTTGTTTTCTATTGTTTTCATTTAATGCGCTTA
TGTATGTCTCCTGTTCACTTGCTCTTTCTCACCATGCCTGCACACGTGCA
TGCACGCATACGCTTTTCTGAGATAGATACATTTAAAAAGTCAAGCTTCC
TAAGTAATTCCAGATATTTCAACTTTTTCATGCAGACTAAAGTTTCTATT
GCAAAATCTACTTATGANAAGATGAGACAAAAGAGAATCGGAAGAAAAAG
AACTTTTTGATGCTAAAGATTGTGAACGGAAAGAGAACGAATCCCTGGGA
ACCAAATAAAGCATCTAGGAAACGAGAAAAAGACATTCCGAAAGGAAGTT
GTTTTTGTGAATGCTTGTTAAATACCAGTGGTTTGCAACAGGNCCCCCCC
GGAACCAGTATTATGCCCTACGGAACAAATATATGCCCCCCGGGAAGCAG
TATTTGGCCCCCTTGGAGCATTAATTGCCCCCCCGGAAACATTTTTATTG
CCCCGCCCCCTTTCTTAAGGGGTTTGCTTCTCGCGCCTTTTCCAAAACTT
TTTAAAAACCCGGGAAAAAACCTTCTCTTGTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no141_g24.g1 MSMg01no141_g24.g1 CHROMAT_FILE:
MSMg01no141_g24.g1 PHD_FILE: MSMg01no141_g24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:59:50 2005
         (658 letters)



>mm_chr12_66097022_66098079
          Length = 1058

 Score = 1189 bits (615), Expect = 0.0
 Identities = 648/659 (98%), Gaps = 1/659 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atacctggcttcacttgtgttctacaattttaagttcggcaaacttgaacagtgtatata 60
           ||||||||||| | |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 200 atacctggctttatttgtgttctacaattttaagttcggcaaactttaacagtgtatata 259

                                                                       
Query: 61  ctttttataaacagaactgtctccccagccccttgatttatatttttaatattttaggta 120
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 260 ctttttataaacagaactgtctccccagccccttgatttatatttttaatgttttaggta 319

                                                                       
Query: 121 attgaaatttctgatttttaatcacttaaatttctgatatatagtatgcttttatgctac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 attgaaatttctgatttttaatcacttaaatttctgatatatagtatgcttttatgctac 379

                                                                       
Query: 181 acttatggtttatataatatggttgtgcatatatatattcaacagtttatg-agtatctt 239
           ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 380 actcatggtttatataatatggttgtgcatatatatattcaacagtttatggagtatctt 439

                                                                       
Query: 240 caaacactgacagattgatatccttaagcatgaatttaattaaatattagtactatataa 299
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 440 caaacactgacagattgatatccttaagcaagaatttaattaaatattagtactatataa 499

                                                                       
Query: 300 ttctgtcagatcttagttctaaaataaggatttaaaaacacgtagttggtccaggatcaa 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ttctgtcagatcttagttctaaaataaggatttaaaaacacgtagttggtccaggatcaa 559

                                                                       
Query: 360 taatgtgtacctataatcttagcatgttaggagaaagaggcaggaaaatcatgagttcaa 419
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 taatgtatacctataatcttagcatgttaggagaaagaggcaggaaaatcatgagttcaa 619

                                                                       
Query: 420 agtgttcggactgcatagagagggaaaagccaacctgggctatgtgagatcctgtctcaa 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 agtgttcggactgcatagagagggaaaagccaacctgggctatgtgagatcctgtctcaa 679

                                                                       
Query: 480 aacagcatagtttgttttctattgttttcatttaatgcgcttatgtatgtctcctgttca 539
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 gacagcatagtttgttttctattgttttcatttaatgcgcttatgtatgtctcctgttca 739

                                                                       
Query: 540 cttgctctttctcaccatgcctgcacacgtgcatgcacgcatacgcttttctgagataga 599
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 740 cttgctctttctcaccatgcctgcacacgtgcatgcacgcatacacttttctgagataga 799

                                                                      
Query: 600 tacatttaaaaagtcaagcttcctaagtaattccagatatttcaactttttcatgcaga 658
           ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 800 tacatttaaaaagtcaagctttctaagtaattccagatatttcaactttttcatgcaga 858


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 658
Length of database: 1058
Length adjustment: 10
Effective length of query: 648
Effective length of database: 1048
Effective search space:   679104
Effective search space used:   679104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)