BAC Information

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BAC

Clone NameMSMg01-144I11
Chromosome12 (Build37)
Map Location 78,051,892 - 78,052,063
singlet/doubletsinglet
Overlap geneMax
Upstream geneSyne2, Esr2, LOC665957, Tex21, Mthfd1, Akap5, Zbtb25, Zbtb1, Hspa2, Gm70, LOC100041694, Plekhg3, Spnb1, Churc1, Gpx2, Rab15, Fntb
Downstream geneLOC100041765, LOC100041772, Fut8, LOC230765, LOC666659
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-144I11.T7 (MSMg01no144_i11.b1)MSMg01-144I11.TJ (MSMg01no144_i11.g1)
ACCAG348579AG348580
length716721
length of high quality
(start - end)
173 (62 - 234)298 (77 - 374)
definitionCHROMAT_FILE: MSMg01no144_i11.b1 PHD_FILE: MSMg01no144_i11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:05:23 2005CHROMAT_FILE: MSMg01no144_i11.g1 PHD_FILE: MSMg01no144_i11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:05:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAAAATGCGCGGAATTCAAGG
TCATTCCCAACTATGCTGTAGGTTCCAGGTCAGCCAGAGATACAAGAAAC
CCCATCTCAACAAACATGCAAACACAAGAAATTACAATACAGGGCCTGGT
ATCATCCTCTCACCCACTCCTTATCCATTCTGGCCTGTTCGAGATTCCTC
ATCTGGTCTTCCTCCTGCCTTGAATGCCCAGAGTCATACAAATAGTTCTT
CACGACCATGAACTCTGCCCAAAGGTCATCTTGCCAATGGGATCTATCTG
TTCCACCAACCGCCCCACCTTAATCTCCTCCATAGCGCATGCACATGCTC
ATGCAAGCATACCCAGAGTCCTGGCGATTCGGGAACTTAATATGTCTTTC
AGACCAGCCTCACCCTATACAGATCCACCTGCCCTCCCAATTGCTATGAT
TAAAGGTATCTGCTATCTTTACGCCTAGCCAGTATTCCTAATCTTTAGCG
ACTATTTAACTTCTATCATTTCCTTGTTAAATTACAACATCCATCTCTTT
GCTAATAACACTACTTGGTGTGTGTAGATCTTGCCTGGATGTTTGTCGAA
TGGAGTATGCGCAAGGACCACATATGACTAACTATTCTTCCCATTCGTCT
GCTTTTTTATTTTATCCTCTTCTCCCTCCAACAAACGCGTTCCAGATGTA
CCCATTATCCTACATT
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAACAGGGAGTCACCATCCCGCGC
CATCCTGCCCAGCCAGGGCTGGCTACATGAGGAATAAGCCTTTCCCTGGC
TGCCTGGCTTAGGGGCCCATCCTCATCCACTTTCTCCCATTCCTCTTCGG
GCTACCCTGCCTCTGTGTGCCAGCTAGACTCATGTCAACTTGGCACAAGC
TATAGTCATCTAACAAGAGGGGACCTCGATTGAGAAAATACCTCCATAAG
ATCAAGCTGCGGGCAAGCCTGTAGAGTATTCTTTTAATTAGTGATTGGTG
GGGGAGAGACCAGTCCTGGGCTAGTGGTCCTGGGCTCTATAAATAATCAG
CATAAGCAAGCCATGACCCCCAAGTCAGTAAACAGTATCCCTCTATGGCT
TCTGTATCAACTCCTGCTTCCTGGTTCCTGCCCTGTTTGAGTTCCTGCTC
TGTCTTCCTTAAATGATTAAAAGGGTGACGCGGGATAAATCGCTTCCTCC
CCAAGCTGCTTGGGTCATATCGTTTCATCCTCGTGTCAGAAACCACAAGA
CCCTCCATCTCCTTGTCCCATAAAGCGTACCCAGCATGGAACCAGCTGTG
GAAAGTTCTGCCAAGGTCCAGGAACCTCCTGAAGAGCTCAGCCCGCCCCA
TCCTTCTACTCAGTGCCAGGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no144_i11.b1 MSMg01no144_i11.b1 CHROMAT_FILE:
MSMg01no144_i11.b1 PHD_FILE: MSMg01no144_i11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:05:23 2005
         (173 letters)



>mm_chr12_78051692_78052264
          Length = 573

 Score =  317 bits (164), Expect = 2e-91
 Identities = 170/172 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tatgctgtaggttccaggtcagccagagatacaagaaaccccatctcaacaaacatgcaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tatgctgtaggttccaggtcagccagagatacaagaaaccccatctcaacaaacatgcaa 260

                                                                       
Query: 61  acacaagaaattacaatacagggcctggtatcatcctctcacccactccttatccattct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acacaagaaattacaatacagggcctggtatcatcctctcacccactccttatccattct 320

                                                               
Query: 121 ggcctgttcgagattcctcatctggtcttcctcctgccttgaatgcccagag 172
           |||||||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct: 321 ggcctgttcgagattcctcaactggccttcctcctgccttgaatgcccagag 372


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 173
Length of database: 573
Length adjustment: 8
Effective length of query: 165
Effective length of database: 565
Effective search space:    93225
Effective search space used:    93225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)