Query= MSMg01no145_g17.b1 MSMg01no145_g17.b1 CHROMAT_FILE:
MSMg01no145_g17.b1 PHD_FILE: MSMg01no145_g17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:06:30 2005
(645 letters)
>mm_chr12_94770289_94771332
Length = 1044
Score = 1071 bits (554), Expect = 0.0
Identities = 616/650 (94%), Gaps = 26/650 (4%)
Strand = Plus / Plus
Query: 1 taaattctttcaagtgtttaaggaaaaaaaaacctgacatcaatgccatgtccacaaata 60
||||||||||||||||||||| |||||||||| |||| ||||||||||||||||||||||
Sbjct: 180 taaattctttcaagtgtttaa-gaaaaaaaaaactgatatcaatgccatgtccacaaata 238
Query: 61 gaagatgaagagcttccaaattctcaacaatatcttatataagatagatattctctatcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 239 gaagatgaagagcttccaaattctcaacaatatcttatataagatagatattctctatcc 298
Query: 121 cttttcatataaatagtgaattaatgtatttgcattaaattttctcaacagctcagaaac 180
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct: 299 cttttcatataaatagtgaattaatgtatttgcattaaattttcccaacagctaagaaac 358
Query: 181 taatctcaatgttccaatc-ttttttcatattacatttttgtttaaagttttccagaacc 239
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 taatctcaatgttccaatctttttttcatattacatttttgtttaaagttttccagaacc 418
Query: 240 aacatttttaacatataattggctagaatattatctgcctgaacctttatttctagaaag 299
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 aacatttttaacata-aattggctagaatattatctgcctgaacctttatttctagaaag 477
Query: 300 gggcaggaaaaa--aaatacagctatgttactatgatagtggtttattcacaccacaata 357
|||||||||||| |||||||||||||||||||||||||||||||||||| | ||||||
Sbjct: 478 gggcaggaaaaaacaaatacagctatgttactatgatagtggtttattcaaattacaata 537
Query: 358 gttattatctttctatgtgctgaaaagcacttatgtatattatatgtagcctatttaaac 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 gttattatctttctatgtgctgaaaagcacttatgtatattatatgtagcctatttaaac 597
Query: 418 cagtatgtgtataggtgttctgcctgtatgtgtgtgccccatttgcttgcaatatccatg 477
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 598 cagtatgtgtataggtgttctgcctgtatgtatgtgccccatttgcttgcaatatccatg 657
Query: 478 gaggccagaaagatctcacctttcagattgttctgagctacaatctga------------ 525
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 gaggccagaaagatctcacctttcagattgttctgagctacaatctgaacaatgagacct 717
Query: 526 --------gttctttgctacagtaatgagtgctcttaaccaccgatccacatgtatctcc 577
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 caacttgagttctttgctacagtaatgagtgctcttaaccaccgatccacatgtatctcc 777
Query: 578 tatgccttaatgtatttttaacaccccactttccagtgtaacacttcttt 627
|||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 778 tatgccttaatgtattttta-caccccactttccagtgtaacacttcttt 826
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1044
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1034
Effective search space: 656590
Effective search space used: 656590
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no145_g17.g1 MSMg01no145_g17.g1 CHROMAT_FILE:
MSMg01no145_g17.g1 PHD_FILE: MSMg01no145_g17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:06:30 2005
(561 letters)
>mm_chr12_94930531_94931490
Length = 960
Score = 978 bits (506), Expect = 0.0
Identities = 548/562 (97%), Gaps = 2/562 (0%)
Strand = Plus / Minus
Query: 1 aaaaaggaaacagtcaag-aaaaccaatgaccatatttaaaaatagagccatgggtctaa 59
|||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct: 867 aaaaagcaaacagtcaagaaaaacaaatgaccatatttaaaaatagagccatgggtctaa 808
Query: 60 atggagtcttcctcattcactgctcattgaaatgcaaactgtggcagcctgcactggaaa 119
||||||||||| ||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct: 807 atggagtcttcttcattcactgctcattgaaatgcaagctgtggcagcctgcgctggaaa 748
Query: 120 ttactctagagaattctcaacacaatatatttagatatactgcaaaaaaagaaaaaaaga 179
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 ttactgtagagaattctcaacacaatatatttagatatactgcaaaaaaagaaaaaaaga 688
Query: 180 aagaaaatatccaataaaaaaccagttcatcaactttatctttcatatacctctatattt 239
|||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct: 687 aagaaaatatccaataaaaaaccagttcatcaactttatccttcatatacatctatattt 628
Query: 240 tgaaatgactacttaagcattcagattatacaaaattatacgttttttccacaataacta 299
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 627 tgaaatgactacttaagcattcagattatacaaaagtatactttttttccacaataacta 568
Query: 300 cacttaactgaagaaccctacttttgaaagacacttttccagaataacaagaaccaatat 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 cacttaactgaagaaccctacttttgaaagacacttttccagaataacaagaaccaatat 508
Query: 360 ttgaaaaattagtttttcttggtatatatctcttatgatagtctaccaagataattctta 419
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 507 tt-aaaaattagtttttcttggtatatatctcttatgatagtctaccaagataattgtta 449
Query: 420 ttcatccatatttcgatgaggaaaatgaaacctaaaatattacatatggcttatgaaagt 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 ttcatccatatttcgatgaggaaaatgaaacctaaaatattacatatggcttatgaaagt 389
Query: 480 acagcccgacttttaataagaaactctttttgtgttgattttattctagaggagtgtgtg 539
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 388 acagcccgacttttaataagaaactctttttgtgttgattttattctaggggagtgtgtg 329
Query: 540 tttgtgtgtatgtgtgtgtgtg 561
||||||||||||||||||||||
Sbjct: 328 tttgtgtgtatgtgtgtgtgtg 307
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 561
Length of database: 960
Length adjustment: 10
Effective length of query: 551
Effective length of database: 950
Effective search space: 523450
Effective search space used: 523450
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
