BAC Information

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BAC

Clone NameMSMg01-145H09
Chromosome12 (Build37)
Map Location 97,144,605 - 97,145,087
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC217786, LOC100039603, LOC667688, Flrt2
Downstream gene1700019M22Rik, LOC100039664
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-145H09.T7 (MSMg01no145_h09.b1)MSMg01-145H09.TJ (MSMg01no145_h09.g1)
ACCAG349261AG349262
length702703
length of high quality
(start - end)
517 (46 - 562)484 (76 - 559)
definitionCHROMAT_FILE: MSMg01no145_h09.b1 PHD_FILE: MSMg01no145_h09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:06:33 2005CHROMAT_FILE: MSMg01no145_h09.g1 PHD_FILE: MSMg01no145_h09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:06:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCGCG
GAATTCTCACCTGAGCCATACCGAATGGCAGAGAAGCACCTGAAAAAATG
CTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGAT
TCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGC
AGATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTG
GGATTGCAGGCTTGTACAACCACTCTGGAGATCAGTCTGGCGGTTCCTCA
GAAAACTGGATATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGGGC
ATATATCCAGAAGATGCCCCAACTGGTAAGAAGGACACATGCTCCACTAT
GTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAGGAACCCAGAT
GCCCCTCAACAGAGGAATGGATACAGAAGATGTGGTACATCTACACAATG
GAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTTCTGGCCAA
ATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCACAAA
GGAACTCACACAATATGTACTCACTGATAAGTGGATATTAGCCCAAACCC
TAAGATACCCCAGATTTAAGATACCATTTTCCTAAACACTTGAAACTCAG
GA
NNCCGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTATATGACAAGAAAGCCTAGATAAG
AGGAAAGGCAGGCCAAGAGCTGAAAATTCAGGTTATAAAGATTAGAGGGG
ATGATTTTTAAAAGAAAATGTAAGGATCTTTTATCACTAGGTAACTAGAG
AGATTGGGAACAGGGCAGCAGCTAAGTTGGCATGAAGAACAACATTTTTA
ACGTTAATAATCTTCCCAAGATATAATTCTCATGAGTTTCTAACCATATC
TGCAAAGATAAGATGTTATTGAATCCTTATTTTATTTGATATGCATCATA
GCTTTTACTGCTAAGGAAAAATGAAATCCTGACCATTAAATATTCACAGT
AAATTGAGAATGCTTACTATCATTCTGTTTGTGTTTCTCTATGAGTATAT
GTACTATGTAGTAACTGTCACTGCAAATACATGTGATATATCAGCTTCCA
GAGTCTGGAGTATTAGGAAAAGTATGCTGTTAGACATATGAATTCATTCC
AACTCTTCCAAGTCCAGTAAACTTAATATAATAAATCATTCTAAAATATT
GAGCAGAGTGTTTTGGTTTTATTTTTATTATTAACTCTATTCCATTTCCA
TTGTAGAAATCATGTATCTTTCCAGTTTAGAAAGAGAATACTTTCTAGCA
TCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no145_h09.g1 MSMg01no145_h09.g1 CHROMAT_FILE:
MSMg01no145_h09.g1 PHD_FILE: MSMg01no145_h09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:06:33 2005
         (484 letters)



>mm_chr12_97144405_97145288
          Length = 884

 Score =  934 bits (483), Expect = 0.0
 Identities = 483/483 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tatatgacaagaaagcctagataagaggaaaggcaggccaagagctgaaaattcaggtta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tatatgacaagaaagcctagataagaggaaaggcaggccaagagctgaaaattcaggtta 260

                                                                       
Query: 61  taaagattagaggggatgatttttaaaagaaaatgtaaggatcttttatcactaggtaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taaagattagaggggatgatttttaaaagaaaatgtaaggatcttttatcactaggtaac 320

                                                                       
Query: 121 tagagagattgggaacagggcagcagctaagttggcatgaagaacaacatttttaacgtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tagagagattgggaacagggcagcagctaagttggcatgaagaacaacatttttaacgtt 380

                                                                       
Query: 181 aataatcttcccaagatataattctcatgagtttctaaccatatctgcaaagataagatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aataatcttcccaagatataattctcatgagtttctaaccatatctgcaaagataagatg 440

                                                                       
Query: 241 ttattgaatccttattttatttgatatgcatcatagcttttactgctaaggaaaaatgaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttattgaatccttattttatttgatatgcatcatagcttttactgctaaggaaaaatgaa 500

                                                                       
Query: 301 atcctgaccattaaatattcacagtaaattgagaatgcttactatcattctgtttgtgtt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atcctgaccattaaatattcacagtaaattgagaatgcttactatcattctgtttgtgtt 560

                                                                       
Query: 361 tctctatgagtatatgtactatgtagtaactgtcactgcaaatacatgtgatatatcagc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tctctatgagtatatgtactatgtagtaactgtcactgcaaatacatgtgatatatcagc 620

                                                                       
Query: 421 ttccagagtctggagtattaggaaaagtatgctgttagacatatgaattcattccaactc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttccagagtctggagtattaggaaaagtatgctgttagacatatgaattcattccaactc 680

              
Query: 481 ttc 483
           |||
Sbjct: 681 ttc 683


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 484
Length of database: 884
Length adjustment: 10
Effective length of query: 474
Effective length of database: 874
Effective search space:   414276
Effective search space used:   414276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)