BAC Information

Click to search

BAC

Clone NameMSMg01-146A14
Chromosome12 (Build37)
Map Location 113,988,720 - 113,989,199
singlet/doubletsinglet
Overlap genenone
Upstream geneKlc1, Xrcc3, Zfyve21, Ppp1r13b, LOC100041886, 2010107E04Rik, BC048943, Tdrd9, A530050D06Rik, Kif26a, A730018C14Rik, A530016L24Rik, Tmem179, 2610204M08Rik, Adssl1, Siva1, Akt1, EG382639, AW555464
Downstream geneLOC382640, Pld4, AI450948, LOC100041194, BC022687, Cdca4, Gpr132, Jag2, Nudt14, Brf1, Btbd6, Pacs2, Tex22, Mta1, Crip2, Crip1, 4930427A07Rik, LOC676349, Tmem121, Igh, Igh-2, Gm900, Igh-1b, Igh-3, Ighg1, AI324046, LOC668370, LOC668375, EG382645, Igh-5, Igh-6, Ighj4, Ighj3, Ighj2, Ighj1, Ighd4-1, Ighd3-2, Ighd5-6, Ighd2-8, Ighd5-5, Ighd2-7, Ighd5-8, Ighd5-4, Ighd2-6, Ighd5-7, Ighd5-3, Ighd2-5, Ighd5-2, Ighd2-4, Ighd6-2, Ighd2-3, Ighd6-1, Ighd1-1, 4930523C11Rik, Ighd3-1, Ighd5-1, Adam6, Ighv5-1, Ighv2-1, Ighv5-2, Ighv2-2, Ighv5-3, Ighv5-4, Ighv6-1, Ighv2-3, Ighv5-5, Ighv5-6, Ankrd12-like, Ighv5-7, EG668389, Ighv5-8, Ighv5-9, Ighv5-10, Ighv2-5, Ighv5-11, Ighv5-12, Ighv2-6, Ighv5-9-1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-146A14.T7 (MSMg01no146_a14.b1)MSMg01-146A14.TJ (MSMg01no146_a14.g1)
ACCAG349680AG349681
length1,2461,246
length of high quality
(start - end)		480 (139 - 618)728 (91 - 818)
definitionCHROMAT_FILE: MSMg01no146_a14.b1 PHD_FILE: MSMg01no146_a14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:07:20 2005CHROMAT_FILE: MSMg01no146_a14.g1 PHD_FILE: MSMg01no146_a14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:07:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTGTTTTTTTNAAACAATGGGCGCTAAGACTACTAAGGGAGAGGATCCGC
GGAATTCCAGGGGGCTTTTGCCCCCTTTAATGAAAGGAGCTGTTCTGAGA
TTTCACATTCATTACATATGGTGGCTACTTTCCCCACGCCTTTGCGAGTG
GAAACCGGTGACGCTTGGACATGTGCATCCGTTAGAACACAGCAATATTC
TAGACATTGTGGCATAAAACGTGTTACTGGCATAGCTCACAATCTTACAA
GATAAGCTGCTGTAGGGAGAACTCATTGTGCTTTATTTTACTTGAAATTC
TCATAATTTTAGTGTCAGTAGCTTCTGAATGGTATAGTTAAATGATATAC
TTAAGACAGCCTACAGCAAGCTCATACCCCTCAGAAAATAGCCTCGGCTC
CTATTTATATGGCATTGCCCAGCCAGACTTCCACAGCCTGGGACCTACTC
CTGGGCTATAGAAACAGATATCTTAGTGTAATGAGCTGAATAAACCCCTA
GCATACCCATGGTCTATTCTTTTTGCTTAAAAAAAAAATGTAAGTATTAA
TCCAAGCACTTCCCCAGGTGCTGGTCACAGAGAAAACCCAGTGTTGCTGT
TGGGATCCGAGCCCTGTGGCTCCTGTGCCTCTCATGGTTCTGTGGTTCTT
GTCCCCCTCTCCTGCAGTCATATGGCGTATAGCTCATAAACCTTCCTTAT
CCAGCACACCAGGGCAGCCAGGGCTACTGTGCTGTGCAGTCTCTTTCTGT
ACAGCTCGTCCTCCCGAATCGGTATTGCTGGTGTGTAGTAGTTGAGTGCG
TGTATAGGTCTGATGTATCGTTTGTACGCATCATACTACAGCTGGTATTT
GGAACCCAGGTTCTATTTGTCATGAGATCTTATTTAGGTTTCAGCATTGT
ATAGGGTAAAATGTATTGTTATTGTTTTACTTTTTTTTTTATAGGTTTTA
TTATCTTTCTTTTTTTTCTTATTATATTTCTTTTTTTTTTTTTCATTATA
TTATAATTATTTCCATAGTTTTTTTTTTTTTCTTTTTATCTCTTTCTTTT
TATCACTTTCTTTTCTTTATTTATTTTATTTATTTCTTTCTTTTTTCTTC
TATATTTTATCTTCATTTTTTTATCTTTTTTTGTTATATATTTATTTTTC
AATATTTATCTATATTTTTTTTCTTTTTCTATCTTTTTATTTCTTATTTC
CTTATTATATTTAAATATTTATTTTTNTTTTTTATTCTCTTAATTT

NCCATCTCTTTTTTAACGAAGGTAGCCTGGGGXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCCAATAAAAGCTGAATCCTTCTC
AACAGNCTGTTTTACGGCCCTTTTTAATTACCATGACCCCCCGTTCTGGT
TCCGGAATGAGGGATCTTCCTTGCGCCGGTGATGGTAACCGTCCCGTCCC
GGGTTTTCTCGTCCCGGGATTTCTCGTCCCAGGTCTTCTCGTCCCGGGAT
TTCTCGTCCCAGGTCTTCTCGTCCCGGGTTTCGGCACCAACTCTTACACG
CGTTCTCGCGACCGGCCAGGAAGAACGCAACAAACCGTAATCTTCTGCGG
CAAAAGCTTTATTGCTTACATCTTTAGGAGCCAGAGAGCAAGAGAGCAAA
AGCAAGATTTAGCAAGAAAGCAAGAAAAAGAACAAGAACAGGAAAGCAAG
AGAGAGAAAAAGAACAAGAACAAGAAAGCAAGAGAGAGAAAAAGAACAAG
AAAGCAAGAAGAACAAGAAAGCAAGAGAAAGCAAGAGAGAGAAAAAGCAT
GGCAAAACCCCGTCCCTTTTAAGGAGAATTATCCTCCGCCTAGGACGTAT
TACTCCCTGATTGGCTGCAGCCCATCTGCCCAGTTGTCATCACGAGAAAG
GCAGAACACATGGCGGGAAAACTGCCCCTGCACGTGTGCAGATTATGTTT
AATGGCAAATGTGAGGGCGGCTCCCAACAGTTAGGGTCACTTAAAGCAGC
AGAAATGACACAAAGACGGTTGTATCACCAAAGCCCACCCCAGCATGGGT
GACAATTCACAAAGCTGGGAACATGAAGCATACTGTACAGCCTTAGGTTG
CTCAACAGGTCGGAGAGTGGCCTTTCCAGGATCTTCAGCTAATTTAACAG
TTTCCAGGTAGCTCAGCTGTTTTCTGTTGTTCAGGCCTGAGTGGGAATCT
TCTTAACAGCTTTGTTTTGTCTGAAGGTTCTTGGCTTTTCCTATTCTGAA
AAGAATTCCCAGCTTTTTTTGGGTATTCCGGGGGGGGCTCTCCCCATGAA
GTCTGATCTTTTTTTGGGGAATTTCTGGTAAATTTAAAAAATGTTGGCCT
TCCTGCTTTAAGAAGACTCCCTTTTGTAAAAAAGGTTTTATCTCCCCGGA
AAAAGGTTTCCTATCTTATGTTCTTTCTTCACATTAAATTTTTTTTGTGG
GTGGTTCTGGTTCATTCGGCTCCACCTGTGTATTGTTCTATTAACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no146_a14.b1 MSMg01no146_a14.b1 CHROMAT_FILE:
MSMg01no146_a14.b1 PHD_FILE: MSMg01no146_a14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:07:20 2005
         (480 letters)



>mm_chr12_113988520_113989399
          Length = 880

 Score =  905 bits (468), Expect = 0.0
 Identities = 477/480 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctttgcgagtggaaaccggtgacgcttggacatgtgcatccgttagaacacagcaatat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cctttgcgagtggaaaccggtgacgcttggacatgtgcatccgttagaacacagcaatat 260

                                                                       
Query: 61  tctagacattgtggcataaaacgtgttactggcatagctcacaatcttacaagataagct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctagacattgtggcataaaacgtgttactggcatagctcacaatcttacaagataagct 320

                                                                       
Query: 121 gctgtagggagaactcattgtgctttattttacttgaaattctcataattttagtgtcag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gctgtagggagaactcattgtgctttattttacttgaaattctcataattttagtgtcag 380

                                                                       
Query: 181 tagcttctgaatggtatagttaaatgatatacttaagacagcctacagcaagctcatacc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tagcttctgaatggtatagttaaatgatatacttaagacagcctacagcaagctcatacc 440

                                                                       
Query: 241 cctcagaaaatagcctcggctcctatttatatggcattgcccagccagacttccacagcc 300
           ||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||
Sbjct: 441 cctcagaaaatagcctcggctcctatccatatggcattgcccagccagacttccacagcc 500

                                                                       
Query: 301 tgggacctactcctgggctatagaaacagatatcttagtgtaatgagctgaataaacccc 360
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 501 tgggacctactcctgggctatagaaatagatatcttagtgtaatgagctgaataaacccc 560

                                                                       
Query: 361 tagcatacccatggtctattctttttgcttaaaaaaaaaatgtaagtattaatccaagca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tagcatacccatggtctattctttttgcttaaaaaaaaaatgtaagtattaatccaagca 620

                                                                       
Query: 421 cttccccaggtgctggtcacagagaaaacccagtgttgctgttgggatccgagccctgtg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cttccccaggtgctggtcacagagaaaacccagtgttgctgttgggatccgagccctgtg 680


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 480
Length of database: 880
Length adjustment: 10
Effective length of query: 470
Effective length of database: 870
Effective search space:   408900
Effective search space used:   408900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |