BAC Information

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BAC

Clone NameMSMg01-146A23
Chromosome12 (Build37)
Map Location 43,224,257 - 43,224,962
singlet/doubletsinglet
Overlap genenone
Upstream geneImmp2l, EG638533
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-146A23.T7 (MSMg01no146_a23.b1)MSMg01-146A23.TJ (MSMg01no146_a23.g1)
ACCAG349697AG349698
length1,1741,175
length of high quality
(start - end)
730 (121 - 850)672 (123 - 794)
definitionCHROMAT_FILE: MSMg01no146_a23.b1 PHD_FILE: MSMg01no146_a23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:07:23 2005CHROMAT_FILE: MSMg01no146_a23.g1 PHD_FILE: MSMg01no146_a23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:07:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCGTCCCTGTTTTTATCAGTGGGCGCATCGACTCCTATGGGAGAGGATCC
GCGGAATTCCATAGTTTTAAGAACCATATAAGGTATTTACCTTGTCATAT
AAGCAAATGTGTATCTGTTGTATTTCTCTGGGAAACTTGTTCTTTTCTGG
AGGGAAATTAAGGAGCAGTGGATCTGATGGAGAGAGGAGGCAGGGGCAGG
GAAGGGAATGCGAAGACTGGAGGGAGAGGAAATTGTAATCAGGATGTAAT
GTATGAGAGAAAAATCAAAGAAAAAAATGTATCATTAAAAAACGGAGAAA
AAATTTGTCAACCTTTGGTTTAAAGTTATTTTATTTTATTTTATTTTTTA
TTTCTTTGTAGGTATTAATTCTCACTTGGCATTTGACCTTCAATAAGAAA
TTTATTGTTGTTACATTTCTGACTTTGACTTCTTTTCTTATTAAAATAAA
TGTTTTAATGCTTTTTATTTAAAAAAAATAACACCCGCACATAAAAGCAG
TAACAGTAGGCCAAAGAATGACCTGAACTTTCTATGAAATATTTTTTGAA
TTAGTATACTCTCTTACAGATCTAAATACAAATCTAAGGCAACCACAAGA
TTAAATTAAATGTAAAAGAAGAAAATAAAAGCTGAAGCTCCAACCCCAAG
ATGTCAATAAGGATGGACAAGTCTATGCTTTGCTGGGAAACTTAAGGGGA
AACATTTTTTTTTTGTTCACAATTATCAATTTGTTTCATTTAGATAAAAT
TATTTCAAAATAATGAAAAACAAAACAATAGACCCTTTTGCAGCATGTAG
TTTCTACTACCCCATTTTAAGCTCTGGGCAGACCAGCCCCGCACAGGCTC
TCTTGGATCTGCCAATGAAAGACACACCCCCATTACCTTATTTCAAAATG
CTTTTAGCTCTTTGCCCATACCCTTCTTTTTTTTTTTTTATACTTTTTAT
TAGGTATTTTCCTCATTTACATTTCCAAGGCTATCCCCAAAGTCCCCCAA
TAACCCACCAACTCAATCCCATTTTTTTGGGCCCTGGCATTTCCCCTGGT
CTGGGGGCAATAAAAAGGTTTGGCAAGCCCCAAGGGGCCCTCTTCTTTTC
CAGGGAAGGGCCCCAAAAAAGGCACCTCTTTTTGGATACATTTGGCCCGC
TTTGAGAGCAAAAAACTTCTCGCG
NCCGACCATTTTTAAACGCATGGAGNCTGGGGCGCCXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCCTTTAAAAGGCCTANTGANTTACA
GNCCTGACTTGGAATCCTTTTTACTGCCTTAAAAATAGTAACAATTCTAA
AGGCTCTATATTATTTAGAATTCTCCAGAGACACATAGACAAAGCAGGTG
GTAGTAGGGGAAAGACAAATGATAGGTGACTTATTAAAGGGATTTGTACA
AGTAATAAGGGGGATTGATTGGCTCAAAGATAAACCACTCAGTTGAAGAC
ACAGGAGTGACTATGGCATGCCTTACTCCAAATTTAAAGACATCAGAACC
AGGGAAGTGATGTAATTTAATTTAACTCAATCAGGTGAAAGATTTGAGAA
CCTGTTGAATAGATGATACCTGGAGACCAAAGGCTAGTGAATAGAAAATT
CTTATGTTCAAGGACATTAGGAGACACTAGTCCCAGGACAGAGAGATGTG
GGGAAAGAGCAGGGAGGGAACAAAAGATAGTATAAGATGAGAAGATAGTA
ACAAGGATTCCACTGGGAATCTGGCTAAATTGTGTTTATATTGTATTCTG
AAAAAGAACCTATCTGATGTTGAATGTACAACTAACATTAATTTGACAAA
TGACTTATAAGACAGTGTACAATTTAGGCTGAGGCTGTGTGGCCACTTTT
TGGCAGGTTTCTATTATGAACCAGGACCAAAATGTGAGGCAGAATGAAAT
GAAAATTATGTAGTCTAGCAAGGAAAGGAGCATAGCACCTTTAAAGCCAC
AGACAATGGGGAACAGGAAAAAAAAAACATAATTGCTGGAGAGAAATACC
TTTGAAGAAAATCTACTCACTTCCCCCAACGCAACATGGAGGTGTTTTAA
AGACAGTCTTTTCAATACAGAGAGAAAATTTAAACTTGTTTGATGACAAA
GTCCTTTTAAAAGCGAGTGTCTGAAAACAAAGTCCCCCTTGGATGGTCTG
GGAAAGGGTTGGCAGCTTTTTGGGGGTTCATGTGCCCAGGACCCTGAAGG
GTGGCTACAATTGGGGGCCCCAAAGGAGCCCACAATGGCTAAAAACCCAC
CCATTATTACCGTAAAAACCCAACCCCTTTGGGGGAAAGGCCTTTAAAAG
AGCCCAAAATAGGAAACCTTTAATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no146_a23.b1 MSMg01no146_a23.b1 CHROMAT_FILE:
MSMg01no146_a23.b1 PHD_FILE: MSMg01no146_a23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:07:23 2005
         (730 letters)



>mm_chr12_43224056_43225182
          Length = 1127

 Score = 1139 bits (589), Expect = 0.0
 Identities = 683/719 (94%), Gaps = 17/719 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   tatttctctgggaaacttgttcttttctggagggaaattaaggagcagtggatctgatgg 60
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 202 tatttctctgggaaacttgttcttttctggagggaaattaaggaacagtggatctgatgg 261

                                                                       
Query: 61  agagaggaggcaggggcagggaagggaatgcgaagactggagggagaggaaattgtaatc 120
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 262 agagaggaggcaggggcagggaagggaatgggaagactggagggagaggaaattgtaatc 321

                                                                       
Query: 121 aggatgtaatgtatgagagaaaaatcaaagaaaaaaatgtatcattaaaaaacggagaaa 180
           ||||||||||||||||||||| |||||||||||||  || |||||||||||| |||||||
Sbjct: 322 aggatgtaatgtatgagagaagaatcaaagaaaaa--tgcatcattaaaaaaaggagaaa 379

                                                                       
Query: 181 aaat-ttgtcaacctttggtttaaagttattttattttattttatttttt-atttctttg 238
           |||  ||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 380 aaaaattgtcaacctttggtttaaagttattttattttattttatttttttatttctttg 439

                                                                       
Query: 239 taggtattaattctcacttggcatttgaccttcaataagaaatttattgttgttacattt 298
           |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct: 440 taggtattaattctcacttggcatttgaccttcaataagaaaattaatgttgttacattt 499

                                                                       
Query: 299 ctgactttgacttcttttcttattaaaataaatgttttaa-tgctttttatttaaaaaaa 357
           |||||||||||||||||||||||| |||||||  |||||| | |||||||||||||||||
Sbjct: 500 ctgactttgacttcttttcttattgaaataaaaattttaaat-ctttttatttaaaaaaa 558

                                                                       
Query: 358 ataacacccgcacataaaagcagtaacagtaggccaaagaatgacctgaactttctatga 417
            ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 559 -taacaccagcacataaaagcagtaacagtaggccaaagaatgacctgaactttttatga 617

                                                                       
Query: 418 aatattttttg-aattagtatactctcttacagatctaaatacaaatctaaggcaaccac 476
           ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 aatattttttttaattagtatactctcttacagatctaaatacaaatctaaggcaaccac 677

                                                                       
Query: 477 aagattaaattaaatgtaaaagaagaaaataaaagctgaagctccaaccccaagatgtca 536
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 678 aagattaaattaaatgtaaaa-aagaaaataaaagctgaagctccaaccccaagatgtca 736

                                                                       
Query: 537 ataaggatggacaagtctatgctttgctgggaaacttaaggggaaacattttttttttgt 596
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||
Sbjct: 737 ataaggatggacaagtctatgctttgctgggaaacttaaggggaaacattttttt---gt 793

                                                                       
Query: 597 tcacaattatcaatttgtttcatttagataaaattatttcaaaataatgaaaaacaaaac 656
           ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||   
Sbjct: 794 tcacaattatcaatttgtttcatttagataaaattattttaaaataatgaaaaacaa--- 850

                                                                      
Query: 657 aatagacccttttgcagcatgtagtttctactaccccattttaagctctgggcagacca 715
             |||||||||||| ||||||||||||||||||||||| ||||||||| | ||||||||
Sbjct: 851 --tagacccttttgtagcatgtagtttctactaccccactttaagctccgtgcagacca 907


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 7
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 730
Length of database: 1127
Length adjustment: 10
Effective length of query: 720
Effective length of database: 1117
Effective search space:   804240
Effective search space used:   804240
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)