BAC Information

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BAC

Clone NameMSMg01-147D09
Chromosome12 (Build37)
Map Location 113,269,659 - 113,455,834
singlet/doubletdoublet
Overlap geneTdrd9, A530050D06Rik, Kif26a
Upstream geneRcor1, 4930595D18Rik, Traf3, Amn, Cdc42bpb, A230065H16Rik, 1200009I06Rik, Tnfaip2, Gm266, Eif5, Mark3, Ckb, 6720458F09Rik, Bag5, 2810002N01Rik, Klc1, Xrcc3, Zfyve21, Ppp1r13b, LOC100041886, 2010107E04Rik, BC048943
Downstream geneA730018C14Rik, A530016L24Rik, Tmem179, 2610204M08Rik, Adssl1, Siva1, Akt1, EG382639, AW555464, LOC382640, Pld4, AI450948, LOC100041194, BC022687, Cdca4, Gpr132, Jag2, Nudt14, Brf1, Btbd6, Pacs2, Tex22, Mta1, Crip2, Crip1, 4930427A07Rik, LOC676349, Tmem121
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-147D09.T7 (MSMg01no147_d09.b1)MSMg01-147D09.TJ (MSMg01no147_d09.g1)
ACCAG350544AG350545
length707718
length of high quality
(start - end)
493 (63 - 555)542 (79 - 620)
definitionCHROMAT_FILE: MSMg01no147_d09.b1 PHD_FILE: MSMg01no147_d09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:09:44 2005CHROMAT_FILE: MSMg01no147_d09.g1 PHD_FILE: MSMg01no147_d09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:09:44 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(113,269,659 - 113,270,151)(113,455,293 - 113,455,834)
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXCTTTCAAAAGAGGATCCGCGGAAT
TCACAGATCTCTTCCTGCCTCTACCTTCTGAGTGCTAGTGCGCCACCACA
CCAACTGCCGTCAAGTTCTGATTCAGGCTGTGGTTGATGCGCTTGTTCTG
TCTGCTATTGGTCTGCACACAAATCTGGACACAGTGGTTCTGCGTGTTTG
AAATCAGAATCCCCCCTTTGTTCACCGCCTCCTGGTGGTGTGAGGAGCTC
CCCTGCTTTTCCTCACTGAGCTTGTGTTGTCACCATGGCCAGGGTTAGGG
CCTTTGCTTTAAAGTCCAGAGACTCCATGTGCCCTACTGTCACTGCGTGT
GCAGAGCAGGCCCCTTTAACTCTGGGTCATGAAGCAGGTGACTAGCTATG
GGGTGAAACCTTCCAAGAACTCCACAGAGGTGCGTCCTGCACATGAGCGG
TGCTTCTGTTGCAGACCTGCAGAGTAGGGTCGCCACTGCAGTGTCGTAGT
TACTTCAGAAACACCAGGACCAAGGCAGCTTACAGAAGGAAGAGTCTGTG
GAGAGCTTACAGTTCAGAGGTTGAGTCCATGGTCATCAGGGCTGGGAGCA
TGTAATCAGGAAGGCCTGTAGGCCTGGTGCTTGAGCAGTAGCTGGGAGTT
TACATCTGATTCACCAGCAAGAGCCAAGACGGTGAGAGCGAATGACATGG
TGGGCCT
NCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGACCAACATGGGGACAACAG
GTCAGCCTGGATGCCTCTGTCTCTGAAGTGGATTGAGCAGAATCCTGGGG
AGCCTAGCTTGCCTCCTGGGCAGCCAGTCAACTCCAAGAGCCATTTTTGT
TAGCTTAGATCCTTCTGAGTCTCCCAGTGATGCAGGAAGATGATATCATT
CTGGGTTCCTTTAAGGATGGAAGGGAGGAAGGCTGGTCAGCCATGGCTCA
GAGCTGTCTGTACTCGGCTGCTTGGCCCCAGGGTCTGCAATTGAAGGAGA
GGATGTTCGTATTACACCGAAAGGGATCTCCATAGAAACCCAAGGTCTAA
TTAGACACAAGTAAGTGCTTCCCAAGTGCATTTTAATTACAGCTTTGCTG
AAATGTTCGTCAGCCTGAGGATTCAATTGCTGTGTATCTGAGCTGAATGG
GCGCTTCCCCGTGCCAGCGCTCTGTGGTGTGTGTGTGCTGTCTTATGTCA
GAACCCAGCAGGATCTGGTATCAAGGAGCCCAGGAGTGGCACCATCAGGG
CTCAGAAAGCAGTGCTAAGGGCCTCAGGCATGCAGAGGGAAGAGACTCCA
TTCCATTCCAGGGAGCACACATGGAGAGGACAGCCCAGCTGCAGGTGTCA
GGACAAAGCCAGTCAATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no147_d09.b1 MSMg01no147_d09.b1 CHROMAT_FILE:
MSMg01no147_d09.b1 PHD_FILE: MSMg01no147_d09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:09:44 2005
         (493 letters)



>mm_chr12_113269459_113270351
          Length = 893

 Score =  953 bits (493), Expect = 0.0
 Identities = 493/493 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcctgcctctaccttctgagtgctagtgcgccaccacaccaactgccgtcaagttctgat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcctgcctctaccttctgagtgctagtgcgccaccacaccaactgccgtcaagttctgat 260

                                                                       
Query: 61  tcaggctgtggttgatgcgcttgttctgtctgctattggtctgcacacaaatctggacac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcaggctgtggttgatgcgcttgttctgtctgctattggtctgcacacaaatctggacac 320

                                                                       
Query: 121 agtggttctgcgtgtttgaaatcagaatcccccctttgttcaccgcctcctggtggtgtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agtggttctgcgtgtttgaaatcagaatcccccctttgttcaccgcctcctggtggtgtg 380

                                                                       
Query: 181 aggagctcccctgcttttcctcactgagcttgtgttgtcaccatggccagggttagggcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggagctcccctgcttttcctcactgagcttgtgttgtcaccatggccagggttagggcc 440

                                                                       
Query: 241 tttgctttaaagtccagagactccatgtgccctactgtcactgcgtgtgcagagcaggcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttgctttaaagtccagagactccatgtgccctactgtcactgcgtgtgcagagcaggcc 500

                                                                       
Query: 301 cctttaactctgggtcatgaagcaggtgactagctatggggtgaaaccttccaagaactc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cctttaactctgggtcatgaagcaggtgactagctatggggtgaaaccttccaagaactc 560

                                                                       
Query: 361 cacagaggtgcgtcctgcacatgagcggtgcttctgttgcagacctgcagagtagggtcg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cacagaggtgcgtcctgcacatgagcggtgcttctgttgcagacctgcagagtagggtcg 620

                                                                       
Query: 421 ccactgcagtgtcgtagttacttcagaaacaccaggaccaaggcagcttacagaaggaag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ccactgcagtgtcgtagttacttcagaaacaccaggaccaaggcagcttacagaaggaag 680

                        
Query: 481 agtctgtggagag 493
           |||||||||||||
Sbjct: 681 agtctgtggagag 693


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 893
Length adjustment: 10
Effective length of query: 483
Effective length of database: 883
Effective search space:   426489
Effective search space used:   426489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no147_d09.g1 MSMg01no147_d09.g1 CHROMAT_FILE:
MSMg01no147_d09.g1 PHD_FILE: MSMg01no147_d09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:09:44 2005
         (542 letters)



>mm_chr12_113455093_113456034
          Length = 942

 Score = 1048 bits (542), Expect = 0.0
 Identities = 542/542 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagaccaacatggggacaacaggtcagcctggatgcctctgtctctgaagtggattgagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 aagaccaacatggggacaacaggtcagcctggatgcctctgtctctgaagtggattgagc 683

                                                                       
Query: 61  agaatcctggggagcctagcttgcctcctgggcagccagtcaactccaagagccattttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 agaatcctggggagcctagcttgcctcctgggcagccagtcaactccaagagccattttt 623

                                                                       
Query: 121 gttagcttagatccttctgagtctcccagtgatgcaggaagatgatatcattctgggttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 gttagcttagatccttctgagtctcccagtgatgcaggaagatgatatcattctgggttc 563

                                                                       
Query: 181 ctttaaggatggaagggaggaaggctggtcagccatggctcagagctgtctgtactcggc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 ctttaaggatggaagggaggaaggctggtcagccatggctcagagctgtctgtactcggc 503

                                                                       
Query: 241 tgcttggccccagggtctgcaattgaaggagaggatgttcgtattacaccgaaagggatc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 tgcttggccccagggtctgcaattgaaggagaggatgttcgtattacaccgaaagggatc 443

                                                                       
Query: 301 tccatagaaacccaaggtctaattagacacaagtaagtgcttcccaagtgcattttaatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 tccatagaaacccaaggtctaattagacacaagtaagtgcttcccaagtgcattttaatt 383

                                                                       
Query: 361 acagctttgctgaaatgttcgtcagcctgaggattcaattgctgtgtatctgagctgaat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 acagctttgctgaaatgttcgtcagcctgaggattcaattgctgtgtatctgagctgaat 323

                                                                       
Query: 421 gggcgcttccccgtgccagcgctctgtggtgtgtgtgtgctgtcttatgtcagaacccag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 gggcgcttccccgtgccagcgctctgtggtgtgtgtgtgctgtcttatgtcagaacccag 263

                                                                       
Query: 481 caggatctggtatcaaggagcccaggagtggcaccatcagggctcagaaagcagtgctaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 caggatctggtatcaaggagcccaggagtggcaccatcagggctcagaaagcagtgctaa 203

             
Query: 541 gg 542
           ||
Sbjct: 202 gg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 542
Length of database: 942
Length adjustment: 10
Effective length of query: 532
Effective length of database: 932
Effective search space:   495824
Effective search space used:   495824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)