BAC Information

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BAC

Clone NameMSMg01-147E05
Chromosome12 (Build37)
Map Location 58,189,126 - 58,189,541
singlet/doubletsinglet
Overlap geneSlc25a21
Upstream geneLOC382601, Mbip, EG621837, E030019B13Rik, Titf1, LOC100039993, Nkx2-9, Pax9
Downstream geneAU021838, LOC100040044, Foxa1, 4921506M07Rik, EG217600, BC042761
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-147E05.T7 (MSMg01no147_e05.b1)MSMg01-147E05.TJ (MSMg01no147_e05.g1)
ACCAG350582AG350583
length709694
length of high quality
(start - end)
416 (86 - 501)422 (76 - 497)
definitionCHROMAT_FILE: MSMg01no147_e05.b1 PHD_FILE: MSMg01no147_e05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:09:48 2005CHROMAT_FILE: MSMg01no147_e05.g1 PHD_FILE: MSMg01no147_e05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:09:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AACACCCAAAATCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGA
CAATCCGCGGAATTCCCTCGACTCTCCAAGTCAAACAAAACCCTCTAACA
TCAGAGGTTTCTTTTCAAGTATTTGGTCACAATAGCAAGAAAACTGACTA
ATCAAATGACAAAATTTATTCCGTAATGTAAGGGATTACAGGAAATTGAA
ACCTTATCAAAACCATATCAGATTCAAGGTTTCAGATTCAAGGCTTCTTA
GAGGAACTGATGCCTGAGGAGGGTATGGTGCACAAGAAATGAGGTCAAAG
AGCTATTATTGGTTCAGAGTGAATGCCATGACATGTGGTAGATAAATACA
ATGTGAAGGACCTTCCACACAGGGTAAGATGCCTAAATTATATCTTAAAA
TTTTTTAGGCTTTTTATGTAAATTTATTTATCTATGAGTGTTTTGCCAAT
ATGTATGCCTGTATGCACTGGGAAGATCACATTTATAGTCTGTTTTTCTA
GAGTAAGTAAAGGTTACCCCTGGATGCAGTGCGGGCAGATTGCCTAGGAG
AGCAGCTACCGCGATCCCTTTCCCTAAGAGAGATCTCTTCAATCCTAGCA
TCGTAACGTGATTTCACCTAACAAAACACAAGGCCTTGCTTATACCACCC
AAAAATGCGCGGAGTTCAAACCCCCCCCGAAAACATCCCACTAACAACGC
TCGATTTTC
GATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAAAGTCTGTCTATTCAGCAAGTTCC
AGGACAGCCATGCTTAGACAGTGAAGGAGATGGAAAACAGAAAGCTAGTT
ATAATGAAGGGGGACATGTTCCAGCCCTACAAGAAGCAGAACTTGGCAGC
TTCAGCCATGTGTCTCTGACTTAACATTCAAGAGGAGGAGACTACTCTGG
GACAATTGCTGCTGGTTAGCTGGAGCTAAGAAATTAGCGATGATTGAGTA
GAGACCAGCATCATTGAGATGAAATCTGGAAGTGTTTTCCGAGAGCACAA
GAAGCTGTGTTCCAGAAATCACCAAGGTTGTACCTTGTGCTGCAGCTATA
CTTGGTAATGTGTAAGAGTCACCAAGGTGGTATTGGCTTTAAAGGTATAA
AGGAGCCATGAAGAGCAGCTGAGTCTTTGCACTATGAGAGGCCATGGAAG
GCCATTAGAGAAGGTCACTTGCAGTTAATGGTCCAGGACTTAAGGGGTCA
TGCCATGGATTTGAGGCTTGGCCCCCTGAAGCGAGCCTATGAGAAGCTAC
TGGTGAAGCCTAGCCGCAGCAGAAGACGCCCGTGCATTTGAGATGCCCGT
ACTTTTACATGATCCCCCAGAAAAGCAGCACCCGTGGAATGAGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no147_e05.b1 MSMg01no147_e05.b1 CHROMAT_FILE:
MSMg01no147_e05.b1 PHD_FILE: MSMg01no147_e05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:09:48 2005
         (416 letters)



>mm_chr12_58188926_58189741
          Length = 816

 Score =  781 bits (404), Expect = 0.0
 Identities = 413/416 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaaaccctctaacatcagaggtttcttttcaagtatttggtcacaatagcaagaaaact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caaaaccctctaacatcagaggtttcttttcaagtatttggtcacaatagcaagaaaact 260

                                                                       
Query: 61  gactaatcaaatgacaaaatttattccgtaatgtaagggattacaggaaattgaaacctt 120
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 261 gactaatcaaatgacaaaatttatttcgtaatgtaagggattacaggaaattgaaacctt 320

                                                                       
Query: 121 atcaaaaccatatcagattcaaggtttcagattcaaggcttcttagaggaactgatgcct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atcaaaaccatatcagattcaaggtttcagattcaaggcttcttagaggaactgatgcct 380

                                                                       
Query: 181 gaggagggtatggtgcacaagaaatgaggtcaaagagctattattggttcagagtgaatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaggagggtatggtgcacaagaaatgaggtcaaagagctattattggttcagagtgaatg 440

                                                                       
Query: 241 ccatgacatgtggtagataaatacaatgtgaaggaccttccacacagggtaagatgccta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccatgacatgtggtagataaatacaatgtgaaggaccttccacacagggtaagatgccta 500

                                                                       
Query: 301 aattatatcttaaaattttttaggctttttatgtaaatttatttatctatgagtgttttg 360
           |||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct: 501 aattatatcttaaaattttttaggttttttatgtaaatttatttatttatgagtgttttg 560

                                                                   
Query: 361 ccaatatgtatgcctgtatgcactgggaagatcacatttatagtctgtttttctag 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccaatatgtatgcctgtatgcactgggaagatcacatttatagtctgtttttctag 616


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 416
Length of database: 816
Length adjustment: 9
Effective length of query: 407
Effective length of database: 807
Effective search space:   328449
Effective search space used:   328449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)