BAC Information

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BAC

Clone NameMSMg01-147I20
Chromosome12 (Build37)
Map Location 15,995,382 - 15,995,749
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042426, LOC217409, Trib2, LOC100043268, EG432636, LOC100043273
Downstream geneLpin1, Ntsr2, Greb1, E2f6, Rock2, Pqlc3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-147I20.T7 (MSMg01no147_i20.b1)MSMg01-147I20.TJ (MSMg01no147_i20.g1)
ACCAG350796AG350797
length764717
length of high quality
(start - end)
367 (46 - 412)560 (63 - 622)
definitionCHROMAT_FILE: MSMg01no147_i20.b1 PHD_FILE: MSMg01no147_i20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:10:10 2005CHROMAT_FILE: MSMg01no147_i20.g1 PHD_FILE: MSMg01no147_i20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:10:10 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATTCCTATCCAGAGATAATGACATTTTAATTGTATTTTATTAGCA
TATCACAAACACAATGCTTTCTACCTTTCCTTCTGTCAGAGTTTAACTCG
ATCTTTGTCACCATTCTTTATGAATGTCACGAACATTTGATAGTGAACTT
TGTAGATTCTCTCCTTCACTACTTCCTAATTAGAATTCTGTGAAATAGTA
TACATGACCTTTTACAGTTAGCATCATTATAACACCAGGGCTTCACGTTG
AATACTTGTTGTATTTTCTTATATTGTTCAAATATTTTCCTCACAGATCT
CTTGTATTTTTTTATGAGAACCCCTCATGCTTGTGTGTGTGTGTATGTAT
GAGTGTATATGCCCCCATGTGTAGGATATGCCGCCCAACTCTTCTTTCCC
ACTCTATTCCCCCCCCCCTATATCCTCTCCACCCTCTCCCACCCATTATT
TTTCTTCCTTTGTTATCTCTCTCCCCCCTTTTCTTTTCTCTTCCTCTTTT
CTCTCCCCCTCCCCTCCCCCCCTCTTTTTCCCCTTTTTTTTTTTTCTTTC
TTTCTTCTTCTCCCCCCCTCTTTCTCTAATATCTCCACCCCTTTTTCTCT
TCATTTCACCTCCCCCCTCCCCTTTTTCCCTTCCCCCTCTCCCTCCCACC
CTACCTTCTTTTTTCCCTTCCCCTTTCCTTCCTCCCCTTCTCTTCCTCCC
CTCCCTCTCCTCCG
GAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTTTGTTTAGCTCTGCACCCCATTTTTAAATGAGGTTAT
TTGAATTTCTGGAGTTCAGCTTCTTGAGCTCTTTGTATATATTGGATACT
ATTCCCCTATAAGATTTAGGATTGGTAAAAATTCTTTCCCAATCTGTTGG
TGACATTTTTGTCTTATTGACAGTATCTTTTGCCCTACAGAAGCTTTGCA
ATTTTATGAGGTCCCATTTGTCGATTCTTGATCTTACAGCACAGGCCATT
GCTTTTCTGTTCACGAATTTTCCCCCTGTGCCCATATCTTCGAGGGTTTT
CCCCACTTTCTCCTCAAAAATTTCAGTGTCTCTGGTTTTATGTGGAGTTC
CTTGATCCACTTAGACTTGAGCTTTGTACAAGGAGATAAGAATGGATCAA
TTCTCATCTGTCTACATGATAACCGCCAGTTGTGCCAGCACCATTTGTTG
AAAATGCTGTCTTTTTTCCACTGGATGGTTTTAGCTCACATGTCAAAGAT
CAGGTGACCATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCC
ATTGATCTACCTGTCTGTCGCTGTACCAGTACCATGCAGTTTTTTTTTTT
ATTACAATTGCTGTACCTTGAGGTCAGGCATGATGATTCCCCCAGAGGTT
CTTTTATTGTTGCTATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no147_i20.b1 MSMg01no147_i20.b1 CHROMAT_FILE:
MSMg01no147_i20.b1 PHD_FILE: MSMg01no147_i20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:10:10 2005
         (367 letters)



>mm_chr12_15995178_15995944
          Length = 767

 Score =  685 bits (354), Expect = 0.0
 Identities = 362/368 (98%), Gaps = 6/368 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcattcctatccagagataatgacattttaattgtattttattagcatatcacaaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcattcctatccagagataatgacattttaattgtattttattagcatatcacaaa 264

                                                                       
Query: 65  cacaatgctttctacctttccttctgtcagagtttaactcgatctttgtcaccattcttt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cacaatgctttctacctttccttctgtcagagtttaactcgatctttgtcaccattcttt 324

                                                                       
Query: 125 atgaatgtcacgaacatttgatagtgaactttgtagattctctccttcactacttcctaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atgaatgtcacgaacatttgatagtgaactttgtagattctctccttcactacttcctaa 384

                                                                       
Query: 185 ttagaattctgtgaaatagtatacatgaccttttacagttagcatcattataacaccagg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttagaattctgtgaaatagtatacatgaccttttacagttagcatcattataacaccagg 444

                                                                       
Query: 245 gcttcacgttgaatacttgttgtattttcttatattgttcaaatattttcctcacagatc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gcttcacgttgaatacttgttgtattttcttatattgttcaaatattttcctcacagatc 504

                                                                       
Query: 305 tcttgtatttttttatgagaacccctcatgcttgtgtgtgtgtgtatgt------atgag 358
           |||||||||||||||||||||||||||||||||||||||||||||||||      |||||
Sbjct: 505 tcttgtatttttttatgagaacccctcatgcttgtgtgtgtgtgtatgtgtatgtatgag 564

                   
Query: 359 tgtatatg 366
           ||||||||
Sbjct: 565 tgtatatg 572


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 367
Length of database: 767
Length adjustment: 9
Effective length of query: 358
Effective length of database: 758
Effective search space:   271364
Effective search space used:   271364
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)