BAC Information

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BAC

Clone NameMSMg01-147K01
Chromosome12 (Build37)
Map Location 51,827,718 - 51,827,994
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665071, LOC665077, LOC100039455, Prkcm
Downstream geneLOC100039517, LOC636070, LOC100039525, 6030408C04Rik, Scfd1, LOC620390, LOC100039578, Coch, Strn3, Ap4s1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-147K01.T7 (MSMg01no147_k01.b1)MSMg01-147K01.TJ (MSMg01no147_k01.g1)
ACCAG350853AG350854
length714701
length of high quality
(start - end)
283 (134 - 416)73 (75 - 147)
definitionCHROMAT_FILE: MSMg01no147_k01.b1 PHD_FILE: MSMg01no147_k01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:10:15 2005CHROMAT_FILE: MSMg01no147_k01.g1 PHD_FILE: MSMg01no147_k01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:10:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATCACCAAATCTCTATAATTTGGGXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCGCGGAATTCATGAAGTTCTTACGCAAATGGATAGTACTAGAAA
ATATCATCCTGAGTAACTCAATCACAAAAGCAGTCTCTGTTCCACTGTGA
CCTCTTTTCCTGTCAGTTTGAGTCATGGAAGAAATTGTGATCTACAATGT
CACAGAGAAAAGGTACAGAAAGCGGAGCTGAAACTCTTCCAAGTAAACAG
GAAAAGAATCGTGCCTGTGATGCAAGGCACCATAATGCTGTCGAAATCTG
GAACCTGTGGTTCACGGATGGAATCCTGATAGAATACAAAAGGTATTGAA
ACAAAAGTCTAATTTTAGAGACTTTTGAGACAGAAAACAATTTCTGTTAG
TATTCAAAGTGAGCTTACATCTTCATCTCAATGTGCTCCTAATTTGATTC
CATATCTACTTCCAGAAAAGTAAAAACAAACACACAAACAGCTCACTGAA
AGTGCTGCTCGCCGTCTCCTTCTAGCTCTTTCTCTCAGAGGATTCTCTGC
TTTGGCTATGATTGAAGTGGCATACCCTCCTGTTTAGTGCCCTATCCCCC
CTCAACCCTCCCCAAAGGCCAGCAGGCCCTCTAAACTCTAAAAAGGCCCC
TCCCCTTTTCAAATCAAGAAAAGCCCCCCCCTCCTGAAATAACAAAAACA
CGCCCGCCAACACT
TCATTATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGA
CAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAA
TCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGTCTAACATC
AAAAAGTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAAC
ACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACGACCACTCTGGAAAT
CAGTCTGGCGGCTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCA
GCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAA
GGACACATGCTCCACCACGTTCATAGCATCCTTATTTATAATACGCCAGA
AGCTGGAAAGAACCCCGATGCCCCTCAACAGAGGACTGGATACCCACCAT
GTGCCACATCTACCCCCTGCACCTACACTCACTTACTACCAAGAATTGAA
TTTATCAAATTCCTACCCCCCCGCCACGCCCCCCGCAGGGCATCCTCCCC
ACTGAGCCACACCCTTTTCTCCGTACCCTCCCTCACCACCCACCCCTTGA
CCCACTGAAACTCACCCCCCACCCTATCTTTCTCCCCATCTCCCAACCCC
C
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no147_k01.b1 MSMg01no147_k01.b1 CHROMAT_FILE:
MSMg01no147_k01.b1 PHD_FILE: MSMg01no147_k01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:10:15 2005
         (283 letters)



>mm_chr12_51827518_51828194
          Length = 677

 Score =  474 bits (245), Expect = e-138
 Identities = 271/283 (95%), Gaps = 6/283 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctctgttccactgtgacctcttttcctgtcagtttgagtcatggaagaaattgtgatct 60
           |||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 201 tctctgttccaccgtgacctctttttctgtcagtttgagtcatggaagaaattgtgatct 260

                                                                       
Query: 61  acaatgtcacagagaaaaggtacagaaagcggagctgaaactcttccaagtaaacaggaa 120
           ||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct: 261 acaatgtcacagagaaaaggtacagaaagcggaactgaaactcttccaagtacacaggaa 320

                                                                       
Query: 121 aagaatcgtgcctgtgatgcaaggcaccataatgctgtcgaaatctggaacctgtggttc 180
           |||||| ||||||||||||||||||||||||||||||||      |||||||||||||||
Sbjct: 321 aagaattgtgcctgtgatgcaaggcaccataatgctgtc------tggaacctgtggttc 374

                                                                       
Query: 181 acggatggaatcctgatagaatacaaaaggtattgaaacaaaagtctaattttagagact 240
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 acggatggaatcctgataggatacaaaaggtattgaaacaaaagtctaattttagagact 434

                                                      
Query: 241 tttgagacagaaaacaatttctgttagtattcaaagtgagctt 283
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 tttgagacagaaaacaatttctgttagtattcaaagtgagctt 477


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 677
Length adjustment: 9
Effective length of query: 274
Effective length of database: 668
Effective search space:   183032
Effective search space used:   183032
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)