BAC Information

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BAC

Clone NameMSMg01-148B18
Chromosome12 (Build37)
Map Location 76,954,344 - 76,954,675
singlet/doubletsinglet
Overlap geneSyne2
Upstream geneKcnh5, Rhoj, Gphb5, Ppp2r5e, Wdr89, LOC665931, Sgpp1
Downstream geneEsr2, LOC665957, Tex21, Mthfd1, Akap5, Zbtb25, Zbtb1, Hspa2, Gm70, LOC100041694, Plekhg3, Spnb1, Churc1, Gpx2, Rab15, Fntb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-148B18.T7 (MSMg01no148_b18.b1)MSMg01-148B18.TJ (MSMg01no148_b18.g1)
ACCAG351205AG351206
length803711
length of high quality
(start - end)
69 (70 - 138)333 (72 - 404)
definitionCHROMAT_FILE: MSMg01no148_b18.b1 PHD_FILE: MSMg01no148_b18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:10:54 2005CHROMAT_FILE: MSMg01no148_b18.g1 PHD_FILE: MSMg01no148_b18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:10:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCGAGAGAGCGGCGG
AATTCAATCCCTAGTGTCTAATGTCTAGAAAGAAGAGAGAAAGAAAGCGA
GAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATGTGTCATAGTT
TCCCTTCCCGCGGTTAAGCGCATTATCTTACGCTATTACACGAGAAGTCT
TTCCTTCTAATAGTGTAACATGGAGATCTGCTGTAGTATGGTAATGGCTC
TTATCGGTGATCATTCAATCTAACGTGTCATTACTCTCTATTACCGCGTT
GCCTGTCTGGGTAATGAAGCCTTGTACAATACGTTTTTTTTTTTTATTCC
AAACCCGCGGGTCTCTCTTCCCCTTGAAGCACTGTTGACCCCCCCCGCCC
GTTCCCCCCAATCTTTCTCTATTTTGTTCTTTTTTGTTTTTGTGGTACCA
NAGCCCCCGGGGGAGTAGTGGTTTTCCCTTATTTTTTGTGTTGTCCCCCA
TTCTATTCTTTCCTTTTCCCTTTTTTATACCCTTTTTCTTTCTCTTTCCC
CTTTCCCCTTTCCCACTTACCTGTTTCTCTTACCTTCCTCTATCTTTCCC
CCTTTTCCTTTTTTTTCGCCATCCCCATCTTCCCTCACCTTCCCCCCTCC
TCCCTCTCCCTTTATTATGATTTACACTCCTCTTTCTGTTGTACCTTTGC
CCCCCTTTTTCACTCCTCTTTCTCCTTCTCATATTTCTATACCTTGCATT
TGTTTCTCCTTGTTTCGCCATTATTTTATGTTCCCACCCTCATTGTTTCT
TCC
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCTTCAGTAGGGGGAGAGGCTGGGTGATAG
AATGCATGCTGAGACGATGTGTCAGGCCCTGTTTCAAATCTCTACTACCA
GAGAGAGTGGCTCAAGGTGCAGCTAAGAGAGACGTATAGAAGAAGAAATC
CTTAGGAAAATAGTATTATTATTACAGTCATCAAAATAGTCACTCTGTTT
GTTTGTGTTTTTAGTTTCGCTTTGCAGGCGGTGCAGGCTCGGGTCTTACT
GTTTCCAGTACGTGGCCATTTATGGAACTGAGAAAGAACAGAGGGAATTA
AAAGTTTTTTTAAAAAGAGAACTCTTGTGAACTGAAGGCCAAAGACAGCA
GTGGACTGTTGACCCCCCCCCCCTCTTAGCTACATTACTGGAAGCTACAT
TCTGGATTTGAAGTGCGTAGCTTGCCTTTTTATAACTTGCACAGAACCCA
CGAGGCCAGTTCTTCTGGAGTTCTGCCAAAGAGCCTGAATAGGTCACAGG
GCACAGTCCTGATGATGATTCGAAAAGAAGGCGTGGTCACTTTGTTCCTC
ATGGACGAAGGAAACCCTCCTTGAGAGCCATTGCTCTTTGAGAGGGTAGA
TTTGGCTTTTGCTGTTTCCTGCATGTTTACCAGACTTGCCGAGCTGCAGA
GTTATTAATGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no148_b18.g1 MSMg01no148_b18.g1 CHROMAT_FILE:
MSMg01no148_b18.g1 PHD_FILE: MSMg01no148_b18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:10:54 2005
         (333 letters)



>mm_chr12_76954144_76954876
          Length = 733

 Score =  634 bits (328), Expect = 0.0
 Identities = 331/332 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttcagtagggggagaggctgggtgatagaatgcatgctgagacgatgtgtcaggccctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttcagtagggggagaggctgggtgatagaatgcatgctgagacgatgtgtcaggccctg 260

                                                                       
Query: 61  tttcaaatctctactaccagagagagtggctcaaggtgcagctaagagagacgtatagaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttcaaatctctactaccagagagagtggctcaaggtgcagctaagagagacgtatagaa 320

                                                                       
Query: 121 gaagaaatccttaggaaaatagtattattattacagtcatcaaaatagtcactctgtttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaagaaatccttaggaaaatagtattattattacagtcatcaaaatagtcactctgtttg 380

                                                                       
Query: 181 tttgtgtttttagtttcgctttgcaggcggtgcaggctcgggtcttactgtttccagtac 240
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttgtgattttagtttcgctttgcaggcggtgcaggctcgggtcttactgtttccagtac 440

                                                                       
Query: 241 gtggccatttatggaactgagaaagaacagagggaattaaaagtttttttaaaaagagaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtggccatttatggaactgagaaagaacagagggaattaaaagtttttttaaaaagagaa 500

                                           
Query: 301 ctcttgtgaactgaaggccaaagacagcagtg 332
           ||||||||||||||||||||||||||||||||
Sbjct: 501 ctcttgtgaactgaaggccaaagacagcagtg 532


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 333
Length of database: 733
Length adjustment: 9
Effective length of query: 324
Effective length of database: 724
Effective search space:   234576
Effective search space used:   234576
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)