BAC Information

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BAC

Clone NameMSMg01-148H23
Chromosome12 (Build37)
Map Location 81,394,809 - 81,395,081
singlet/doubletsinglet
Overlap genenone
Upstream geneZfyve26, Rad51l1, LOC100041968, LOC435309, LOC100041674, LOC666754, Zfp36l1, Actn1
Downstream geneWdr22, Exdl2, 2310002D06Rik, Galntl1, LOC100041715, Erh, Slc39a9, 3830431G21Rik, Gm1568, 4933426M11Rik, Sfrs5, Slc10a1, Smoc1, Slc8a3, LOC100042143
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-148H23.T7 (MSMg01no148_h23.b1)MSMg01-148H23.TJ (MSMg01no148_h23.g1)
ACCAG351477AG351478
length725743
length of high quality
(start - end)
344 (75 - 418)279 (73 - 351)
definitionCHROMAT_FILE: MSMg01no148_h23.b1 PHD_FILE: MSMg01no148_h23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:11:25 2005CHROMAT_FILE: MSMg01no148_h23.g1 PHD_FILE: MSMg01no148_h23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:11:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGAATCCG
CGGAATTCAGTGTGGGTTACCGGGCAGGAGAATTGCTAATCTTGTTATGG
TTATTTCTCTTGAGAACAGCTAATATTGTTTTGGTAGCTGCAGGCTTAAT
CATTTTGACCGCTAAAACTATGTTTTTACATTTGTTTGGTCAGCCAGCTT
CCTTATCTGGCTCTGCACTTGGCCTGCAAGGACAGTTTGGAAAGTCCTTT
TTGAAGGGGGAAAGTACTGGGTGGTTTTGAATTCATTTTGGATATTACAG
TTCCAGGCCTTCACTTTATTCTTATAAAATACATACTTTTATGAAATTGT
GACCATCACTATGGCCTGGGCGCTTTTTCAGCTCTCATCCTCCCGTTTGC
CTTATTGGTTTTGTCAGGCCCCCCCACTTAATGGGTTCAAAACACCATAG
AAACGTGTTGACCAAGAGGAGACCAACTAGAGAAGCTGTGTCGAGCTGAG
CATGCTCACTTAGTCACTTAGATCTCTAGAGAGAGGAGCCATTGACTGTG
CTGGCCCGCACTTCGGAAGAGCATAGACGGATTCGTACTGTACCTTCCAC
GGACTTCCGCATCCGACCCTTTCCTCTCGGGTAAAAACCATTAATGCACC
AGCGTCTTCATAGAGCTAGGCTGAGCCCGGTGGTTTCTCTACGCCTACCT
ATTTCCGGTGCGATTTGTCCTGAAC
CGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAATAAGACACACAGAGTGCAGTGTAGAA
GACGGGTGGAATTTATTACAAAATGGCAGACCCTCTTAAGGGTGGTAAAG
GACAATAGCCAAAGTGTCCACTGCAGAGAAAAACACTCTAAGGGCTGAGA
ATACACTGCTGATCTACTTTTTTTGGTAGATTTTTTACTGTTTCTGGAAG
TTTCTGGGATGGTTTCCTGAGGCATGCTTCCTGTTCAGGTGATTGACAGG
CTCATTTGAATTGACCTTTTCTGTTTTTGGCGGTGGAGGGGGGGGGTGCT
ACTCCTCTCTCTGTACCTCTCCTCTCTCTTTTTCCTACTCCTTTTTTTCA
CAATTTTATTTCCTCCCCCCCCCTTTTTTTCTTCTTTCCTTTTTGATTTT
CTCCTTTCTCTTCCCCCCTTTCCTTTTCCATCTTACCCCCTCCCTCTTTT
CCTTCCATCTCCTTCACATTCTACCCCCCAACTCTATTACTCTTCCTTTC
CTCTCCCCTCCTCCTCCTCTATTATCCTCTCCTCTACTTTTCTCCTATAT
ACTGGCGTCATACCCTCTACCTTATTCCCTCCCCCCCTCTTATTCCCATT
TCCCACTTTCCGCCTTCCCTTCTTACTTCCACTTCTCTTTCTCTCCATAT
TTTCTCTCCCCCCCCTTCCCCCATTTTCCTCCTTCCTTATCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no148_h23.g1 MSMg01no148_h23.g1 CHROMAT_FILE:
MSMg01no148_h23.g1 PHD_FILE: MSMg01no148_h23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:11:25 2005
         (279 letters)



>mm_chr12_81394609_81395286
          Length = 678

 Score =  455 bits (235), Expect = e-132
 Identities = 265/279 (94%), Gaps = 11/279 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   aataagacacacagagtgcagtgtagaagacgggtggaatttattacaaaatggcagacc 60
           ||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct: 473 aataagacacacagagtgcggtgtagaagatgggtggaatttattacaaaatggcagacc 414

                                                                       
Query: 61  ctcttaagggtggtaaaggacaatagccaaagtgtccactgcag-agaaaaacactctaa 119
           |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct: 413 ctcttaagggtggtaaaggacaatagccaaagtgtccactgcagaag-aaaacactctaa 355

                                                                       
Query: 120 gggctgagaatacactgctgatctactttttttggtagattttttactgtttctggaagt 179
           |||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct: 354 gggctgagaatacactgctgatctac-ttttttggtagattttatactgtttctggaagt 296

                                                                       
Query: 180 ttctgggatggtttcctgaggcatgcttcctgttcaggtgattgacaggctcatttgaat 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 ttctgggatggtttcctgaggcatgcttcctgttcaggtgattgacaggctcatttgaat 236

                                                  
Query: 240 tgaccttttct----gtttttggcggtggaggggggggg 274
           |||||||||||    |    |||||||||||||||||||
Sbjct: 235 tgaccttttctggggg----tggcggtggaggggggggg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 279
Length of database: 678
Length adjustment: 9
Effective length of query: 270
Effective length of database: 669
Effective search space:   180630
Effective search space used:   180630
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)