BAC Information

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BAC

Clone NameMSMg01-148K14
Chromosome12 (Build37)
Map Location 115,304,959 - 115,305,626
singlet/doubletsinglet
Overlap geneIgh
Upstream genePacs2, Tex22, Mta1, Crip2, Crip1, 4930427A07Rik, LOC676349, Tmem121, Igh-2, Gm900, Igh-1b, Igh-3, Ighg1, AI324046, LOC668370, LOC668375, EG382645, Igh-5, Igh-6, Ighj4, Ighj3, Ighj2, Ighj1, Ighd4-1, Ighd3-2, Ighd5-6, Ighd2-8, Ighd5-5, Ighd2-7, Ighd5-8, Ighd5-4, Ighd2-6, Ighd5-7, Ighd5-3, Ighd2-5, Ighd5-2, Ighd2-4, Ighd6-2, Ighd2-3, Ighd6-1, Ighd1-1, 4930523C11Rik, Ighd3-1, Ighd5-1, Adam6, Ighv5-1, Ighv2-1, Ighv5-2, Ighv2-2, Ighv5-3, Ighv5-4, Ighv6-1, Ighv2-3, Ighv5-5, Ighv5-6, Ankrd12-like, Ighv5-7, EG668389, Ighv5-8, Ighv5-9, Ighv5-10, Ighv2-5, Ighv5-11, Ighv5-12, Ighv2-6, Ighv5-9-1, EG628098, Ighv2-9-1, Ighv5-13, Ighv2-6-8, EG629785, Ighv2-7, LOC668405, Ighv5-15, Ighv5-16, Ighv5-17, Ighv5-18, Ighv2-8, Ighv2-9, Ighv5-19, Ighv7-1, Ighv7-2, Ighv14-1, Ighv4-1, Ighv3-1, Ighv11-1, Ighv14-2, Ighv4-2, Ighv3-2, Ighv11-2, Ighv14-3
Downstream geneEG629812, Ighv6-2, Ighv9-1, Ighv12-1, EG629818, Ighv12-2, Ighv9-3, Ighv7-3, Ighv15-1, Ighv14-4, EG668438, Ighv7-4, EG629833, EG633457, Ighv13-1, Ighv3-6, EG636260, Ighv3-7, Ighv5-21, Ighv3-8, Ighv8-1, Ighv1-1, Ighv13-2, EG435321, Ighv6-3, EG628398, EG639510, Ighv6-6, EG432701, EG629849, Ighv1-2, Ighv10-1, Ighv1-3, Ighv1-4, Ighv10-2, EG668469, EG380809, Ighv1-6, EG668474, Ighv10-4, Ighv1-8, Ighv15-2, Ighv1-9, Ighv1-10, Ighv1-11, EG629860, Ighv1-13, Ighv1-14, Ighv1-15, EG629866, Ighv1-17-1, Ighv1-17, Ighv1-18, EG668493, Ighv1-19, EG668497, Ighv1-21-1, Ighv1-21, Ighv1-22, Ighv1-23, Ighv1-24, Ighv1-25, Ighv1-26, Ighv1-27, Ighv1-28, Ighv1-29, Ighv1-30, Ighv1-31, Ighv1-32, Ighv1-33, Ighv1-34, EG668515, Ighv1-36, Ighv1-37, Ighv1-38, Ighv1-39, Ighv1-40, Ighv1-41, EG629906, EG629908, Ighv1-44, Ighv1-45, Ighv1-46, Ighv1-47, Ighv8-3, EG629919, Ighv1-48, Ighv1-49
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BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-148K14.T7 (MSMg01no148_k14.b1)MSMg01-148K14.TJ (MSMg01no148_k14.g1)
ACCAG351593AG351594
length718728
length of high quality
(start - end)
673 (35 - 707)579 (76 - 654)
definitionCHROMAT_FILE: MSMg01no148_k14.b1 PHD_FILE: MSMg01no148_k14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:11:38 2005CHROMAT_FILE: MSMg01no148_k14.g1 PHD_FILE: MSMg01no148_k14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:11:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTGCGGCGCTAAACGATCACTATTCCGAGAGGATCCGCGGAATTCCTTCA
TAAACCTTGCTCTAATGTGTGCATGAGGATTTATGGAAAAGGGAGACAAT
CAAAGGCACTAACAAGTTTGTGAGACAAGTGACAGTTTTATTTACCTATG
TTCAAAGAACTTTCCTATGTTTTTCATTATTTCCTTAATTCAGCAACAAA
AGCCCCATTTTATCTATGAGCTTCCACATACTTCTAAAAATTCAACTGAT
ATTTCTAACACTTGAGGGTTGTAATTTTCCAACCCAGATATGCTCCAGTA
ATGAAAACACAACTCAATTAAAATGAATACAAGCTCTGTCTGTGACTAGA
TTGGGCAGAAATACCACTACAGTACCTCCTCCCCCATCTATGAGACCCCT
TATAACGCCCGCCTTCTCCAGGCCAGATGCTTCTGTTCTGCTTTTCTTCT
TCCTCCTCCTCCTCCTCCTCCTCCTCCATCATCCTCTCTCTGTCTCACAC
CTCCTTCTTCTCTCTCCCAACTTTCAGCTCCTTCTTCCCTTTCTATTCCC
AATCACAGGCTCTAGCCTTTATTTTACAAATTAAGGTGGGAAGCAGGTTT
ACAGGAAATCACCAGAGTGCTGACTCATTCCTAGTTCACAACTCCTCCAA
GGAGAATGGAATTAGCATCAAATTACAATAGCCACAGAGCTATCAACAAC
ACTTGAGACACAGATTGC
CACGATGTAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGTTG
AGAAGCACCTGAAAAAAAGTTCAGCATCTTTAAACATCAGGGAAATGCAA
ATCAAAACAACCCTGAGATTCCACCTCTTATCAGTCAGAATGGCTAAGAT
CAAAAATGCAGGTGACAGCACATGCTGGTGAGGATGTGGAGAAAGAGGAA
CACTCCTCCATTGTTGGTGGGATTGCAAGTTTGTACAACCACTCTGAGTC
TGGCGGTTCCTCAGAAAATTGGACATACTCCTACAGGAGGATTCAGCAAT
ACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGATA
CATGCTCCACTATGTTCATACCACCCTTATTTATAATAGGCAGAAGCTGG
AAAGAACCCAGATGTTCCTCAACAAGGGAATGGATCCAAAAAATGTGGTA
CATTTACACAATGGAGTACTACTCAGCTATTAAAAACAATAAATTTGTGA
AATTCCTAGGCAAATGGATGGACCTGGAGGACATCATTCTGAGTGAGGTA
ACCCAAGCACAAAGGAACTCACATGCTATGTATGTATGTACTCACTGATA
AGTGGATATTAGCCCAGAAACTTAGAATACCCAAGATACCAGATACCATT
TGCAAAACACATGAAACTCAAGAAGAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no148_k14.b1 MSMg01no148_k14.b1 CHROMAT_FILE:
MSMg01no148_k14.b1 PHD_FILE: MSMg01no148_k14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:11:38 2005
         (673 letters)



>mm_chr12_115304754_115305826
          Length = 1073

 Score = 1261 bits (652), Expect = 0.0
 Identities = 664/668 (99%)
 Strand = Plus / Plus

                                                                       
Query: 6   gaattccttcataaaccttgctctaatgtgtgcatgaggatttatggaaaagggagacaa 65
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattccttcataaactttgctctaatgtgtgcatgaggatttatggaaaagggagacaa 265

                                                                       
Query: 66  tcaaaggcactaacaagtttgtgagacaagtgacagttttatttacctatgttcaaagaa 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 tcaaaggcactaacaagtttgtgagacaagtgacagttttatttacctatgttcaaagaa 325

                                                                       
Query: 126 ctttcctatgtttttcattatttccttaattcagcaacaaaagccccattttatctatga 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 ctttcctatgtttttcattatttccttaattcagcaacaaaagccccattttatctatga 385

                                                                       
Query: 186 gcttccacatacttctaaaaattcaactgatatttctaacacttgagggttgtaattttc 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 gcttccacatacttctaaaaattcaactgatatttctaacacttgagggttgtaattttc 445

                                                                       
Query: 246 caacccagatatgctccagtaatgaaaacacaactcaattaaaatgaatacaagctctgt 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 caacccagatatgctccagtaatgaaaacacaactcaattaaaatgaatacaagctctgt 505

                                                                       
Query: 306 ctgtgactagattgggcagaaataccactacagtacctcctcccccatctatgagacccc 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 ctgtgactagattgggcagaaataccactacagtacctcctcccccatctatgagacccc 565

                                                                       
Query: 366 ttataacgcccgccttctccaggccagatgcttctgttctgcttttcttcttcctcctcc 425
           |||||||| |||  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 ttataacgtccggtttctccaggccagatgcttctgttctgcttttcttcttcctcctcc 625

                                                                       
Query: 426 tcctcctcctcctcctccatcatcctctctctgtctcacacctccttcttctctctccca 485
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 tcctcctcctcctcctccatcatcctctctctgtctcacacctccttcttctctctccca 685

                                                                       
Query: 486 actttcagctccttcttccctttctattcccaatcacaggctctagcctttattttacaa 545
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 actttcagctccttcttccctttctattcccaatcacaggctctagcctttattttacaa 745

                                                                       
Query: 546 attaaggtgggaagcaggtttacaggaaatcaccagagtgctgactcattcctagttcac 605
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 attaaggtgggaagcaggtttacaggaaatcaccagagtgctgactcattcctagttcac 805

                                                                       
Query: 606 aactcctccaaggagaatggaattagcatcaaattacaatagccacagagctatcaacaa 665
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806 aactcctccaaggagaatggaattagcatcaaattacaatagccacagagctatcaacaa 865

                   
Query: 666 cacttgag 673
           ||||||||
Sbjct: 866 cacttgag 873


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 673
Length of database: 1073
Length adjustment: 10
Effective length of query: 663
Effective length of database: 1063
Effective search space:   704769
Effective search space used:   704769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)