TATXXXXXXXXXXXXXXXXXXXXXXXCCACTAGGGCTTGGCGGCGNGGAA
NNCCTTCTTTACACACAACCCCTTGGTCATGATATCACTTCATAACAATA
TAACAGTGACTAAGGAACATACCTAAATATAATGGTAAATTGGTAATATA
CAACATTATTGGGAAGGTAATATAGAACATTATTGATTTTTCAGGGATCT
AACACAATATTTTAAAGTGTTGCTAACAGATGGATTCTTGTGTTCTTCAA
TTTCTTGCCCAATCTATTCCTTCTTCATATTCAATGCTTCCTCCTCCTCC
TCCTCCTCCTCCTCTAACTCCTCCTCCTCCTCCTCCTCCTCCCCCACCTT
TTCCTTTTCTTCTTTATATCCCCCTATCCCCACTCCCCTTCCCACCTACT
TAAACCCCCTTCCCCCCCCCCCCCCTCATTCTTCATTCTTCCCTCCCCCC
CCCCCCTCTCTCCCCTCCTTTTCACTATCCCTCCTCTCCACACCTCTCCC
TTCCCCTCTCCTTTCCACCCCTCCCCCTCCTTTCTCTTCCTTCACTTATC
TTACCTCCCCCCTTCTTCTCCCCCCCCCATTATGACTTCCCCCATATTTA
CTACTCCCTCTCCCTCTCCTCCTTCTCCCCGCCTTTCCCCCCCCCACCTT
CCCTTTTCCCCACCCCCTCCCCCCCTCTCTTTCCCTTTCCATCCCCCCCT
CTTCACACTCCTCTTACTTGCACTTTCCCACCACCCCCCCACCGCTCCCT
CCTCTTTTTTCCTTCTTTCTTTTCCCCCTACTCTCTTCACACCTCCCCTC
TTACCCTTTTTCTCTCCGCCCTTCTCACTCCCCTCTTTACTCCCCCCCTC
TGG

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAAAATCCATTTTATTCTCTTTTG
CACTATTGCCTAATTATTGTCAAAGAGTTGCGGTATTTCATGAAGTACTA
CTTAAGTTCATTGCTTTCGTAAAATGTATGGTGTTAAAATAAAAACAAAA
TTTTTTCAAAAGTTATAAGTAAACATTTTTTTCGAGTTAAACTCTCTGAT
ATTCTTGAATATAATCTTATATTTTGTAATTTTGACTAAAATACTTTCAA
TAATATTTTTATAAATAATTAATTGTAATTCATTGTATAGATACATACTT
ACAGTTATAACTTAATAACTGCATTCAGTAACATTCTACAAATTTTTCTT
TCACTATTAAAAAAATTGACCCCCCCCAATATTTTCGAAATTGGATTTTA
TCCTCCAACCCAAGAATACCCCACTATATAACAATTTTTTTTTTTTTTAC
CCCCTCGTTTTCTCCCCAAACAATTGGAATACCCCGAATTTGTCCCCCTC
TTATTCCCCCTTCCCCTAACACTTCGCGAAAATAAAAAATTTCCTTTGCC
CCCCCTTTTCTTTTTAATCCATTTTTTTTTTCTGTTTTTATATACTTTCC
CCTTTTTCATTTTTTTTTCCCCCTTTCCCCTTTATATTATTCTCCCCTCC
TCCTTACTCCTATTAATTAATCCACCACCCCCCCTTTTTTACACTTCCCC
TTTAAAAAN

Query= MSMg01no150_k10.b1 MSMg01no150_k10.b1 CHROMAT_FILE:
MSMg01no150_k10.b1 PHD_FILE: MSMg01no150_k10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:14:16 2005
         (233 letters)



>mm_chr12_49114689_49115321
          Length = 633

 Score =  435 bits (225), Expect = e-126
 Identities = 231/233 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgatatcacttcataacaatataacagtgactaaggaacatacctaaatataatggtaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 atgatatcacttcataacaatataacagtgactaaggaacatacctaaagataatggtaa 260

                                                                       
Query: 61  attggtaatatacaacattattgggaaggtaatatagaacattattgatttttcagggat 120
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 261 attggtaatatacaacattattgggagggtaatatagaacattattgatttttcagggat 320

                                                                       
Query: 121 ctaacacaatattttaaagtgttgctaacagatggattcttgtgttcttcaatttcttgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctaacacaatattttaaagtgttgctaacagatggattcttgtgttcttcaatttcttgc 380

                                                                
Query: 181 ccaatctattccttcttcatattcaatgcttcctcctcctcctcctcctcctc 233
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccaatctattccttcttcatattcaatgcttcctcctcctcctcctcctcctc 433


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 233
Length of database: 633
Length adjustment: 9
Effective length of query: 224
Effective length of database: 624
Effective search space:   139776
Effective search space used:   139776
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no150_k10.g1 MSMg01no150_k10.g1 CHROMAT_FILE:
MSMg01no150_k10.g1 PHD_FILE: MSMg01no150_k10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:14:16 2005
         (296 letters)



>mm_chr12_49261326_49262021
          Length = 696

 Score =  534 bits (276), Expect = e-156
 Identities = 291/296 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaaaatccattttattctcttttgcactattgcctaattattgtcaaagagttgcggtat 60
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 422 aaaaatccattttattctcttttgcactattgcccaattattgtcaaagagttgcggtat 363

                                                                       
Query: 61  ttcatgaagtactacttaagttcattgctttcgtaaaatgtatggtgttaaaataaaaac 120
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 362 ttcatgaagtactacttaagttcattgctttcataaaatgtatggtgttaaaataaaaac 303

                                                                       
Query: 121 aaaattttttcaaaagttataagtaaacatttttttcgagttaaactctctgatattctt 180
           ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 302 aaaatattttcaaaagttataagtaaacatttttttcgagtaaaactctctgatattctt 243

                                                                       
Query: 181 gaatataatcttatattttgtaattttgactaaaatactttcaataatatttttataaat 240
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 242 gaatataatcttatattttgtaattttgactaaaatactttcagtaatatttttataaat 183

                                                                   
Query: 241 aattaattgtaattcattgtatagatacatacttacagttataacttaataactgc 296
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 aattaattgtaattcattgtatagatacatacttacagttataacttaataactgc 127


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 296
Length of database: 696
Length adjustment: 9
Effective length of query: 287
Effective length of database: 687
Effective search space:   197169
Effective search space used:   197169
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)