BAC Information

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BAC

Clone NameMSMg01-150O13
Chromosome12 (Build37)
Map Location 53,540,516 - 53,540,889
singlet/doubletsinglet
Overlap genenone
Upstream geneScfd1, LOC100039578, Coch, Strn3, Ap4s1, Hectd1, EG544864, LOC100039476, Heatr5a, LOC676784, 6530401N04Rik, Gpr33, LOC100039627, Nubpl
Downstream geneArhgap5, Akap6, Npas3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-150O13.T7 (MSMg01no150_o13.b1)MSMg01-150O13.TJ (MSMg01no150_o13.g1)
ACCAG353220AG353221
length698744
length of high quality
(start - end)
364 (48 - 411)267 (152 - 418)
definitionCHROMAT_FILE: MSMg01no150_o13.b1 PHD_FILE: MSMg01no150_o13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:14:35 2005CHROMAT_FILE: MSMg01no150_o13.g1 PHD_FILE: MSMg01no150_o13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:14:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCCATCAGCTTTACTAAGACAACTTACTAAGGCATGTAAGTATGTA
CAGGTGAAATGTCAAAGAGAATGAATACACTATATCCTTCAACTGTCTTT
GGACACTAGACTTCTGACCCATGTTAGTTCATATCCATCAATGTCAGTGA
GTTACACATCAGTTCTTTCCTACCATGAAAACTGTTCTACTGCCCTAGGA
AAACGCACACATCCTAGCTGTGCCACCGAATTCAGACCCTGATTTCTAAG
AGTAATTTGGTCACACAGGTATTTAACAAGCGTGTTTAGTACCATCTGTG
CCCTCCGTGTGGTCTAAAGATAGTAACAATTAAGACCACTGCACTTAAGA
AACCCACACAAGATGACACCCCAGTAAATCAACATGAGCAACATGTTGGA
ACCTGTCCCAGGAACTGACCTGCACATGCATATCAAAGTGAGCCTTTGTA
TGACTTCTTCAGTGGAAGGCTGCTAGTCTAGGCTGGACATACCTGACGTA
GCAACGCTTCCTTATTTAAGCCAAGTTTGCAATGGCTAACTTGAATCATG
GCTAAAATAATATCCCATAGCCTCTGTCCAGGGGGGCAGCGACACTGTAA
AGCAGAATTTCTACCAAAAGTCTGAAAAGACAAGGTGCGTGATCCCTA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTCTAAGATCAGAAGAAAACAAAG
GTTTCCATTCTTATTCCCTATTCAACACACAAAGAAACAAGGTGGCGCCA
AGGAGGCAAGAAAAAGAAAGAAAAGGCACACAAGTAAGAAAGGAAGTAAA
ACTATCTTTGTTTGTAGATAAGATACTCAGAAAAACTAAGATGCCATCAA
AAGACCATTATAACTGGTGAACTCAATAAAATTGCAGCATTAAAAAAAAA
AAAAAAATCAAGCCGGCAGTGGCGGCGCACGCCTTTAATTCCAGCATTTG
GGAGAGGGATTTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAG
GGAAGCCAAGGCTACACACAGAAACCTGTCTCAAAAAAAAAAATCAATGG
CTTCTCTAGCACTAATAAAATTTCTGAAGATAATGATGAAAACAATTTCA
TCACAAAACTATAAAAAAGCAAAATACCTAAGATTAAATTTGAACAAGAA
AATGAAAACCAACTAAAATTAAAACTACTAAACTCAGAAGAAAAAGAAAT
TGAAGATAATAAAGAAGAGTTTACGGTTTCTGGGTTGGAAAAATTATTAA
AATGTCCCCGATATCTATATGTTCAGCGCACCCTCCCTCATAAATACCAA
TGACCTTCACAGAACTAGCAAAATATCCTACAACTCCTATGAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no150_o13.b1 MSMg01no150_o13.b1 CHROMAT_FILE:
MSMg01no150_o13.b1 PHD_FILE: MSMg01no150_o13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:14:35 2005
         (364 letters)



>mm_chr12_53540326_53541089
          Length = 764

 Score =  642 bits (332), Expect = 0.0
 Identities = 358/374 (95%), Gaps = 12/374 (3%)
 Strand = Plus / Plus

                                                                       
Query: 3   gaattcccatcagctttactaagacaacttactaaggcatgtaagtatgtacaggtgaaa 62
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 191 gaattcccatcagctttactaagacaacttactaaggcatataagtatgtacaggtgaaa 250

                                                                       
Query: 63  tgtcaaagagaatgaatacactatatccttcaactgtctttggacactagacttctgacc 122
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 251 tgtcaaagagaatgaatacactatatcctttaactgtctttggacactagacttctgacc 310

                                                                       
Query: 123 catgttagttcatatccatcaatgtcagtgagttacacatcagttctttc---------- 172
           ||||||||||||||||||||||||||||||||||||||||||||||||||          
Sbjct: 311 catgttagttcatatccatcaatgtcagtgagttacacatcagttctttcaaaaaacgtt 370

                                                                       
Query: 173 --ctaccatgaaaactgttctactgccctaggaaaacgcacacatcctagctgtgccacc 230
             ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 371 tcctaccatgaaaactgttctactgccctaggaaaacacacacatcctagctgtgccacc 430

                                                                       
Query: 231 gaattcagaccctgatttctaagagtaatttggtcacacaggtatttaacaagcgtgttt 290
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 gaattcagaccatgatttctaagagtaatttggtcacacaggtatttaacaagcgtgttt 490

                                                                       
Query: 291 agtaccatctgtgccctccgtgtggtctaaagatagtaacaattaagaccactgcactta 350
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 agtaccatctgtgccctccgtgtggtctaaagatagtaacaattaagaccactgcactta 550

                         
Query: 351 agaaacccacacaa 364
           ||||||||||||||
Sbjct: 551 agaaacccacacaa 564


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 364
Length of database: 764
Length adjustment: 9
Effective length of query: 355
Effective length of database: 755
Effective search space:   268025
Effective search space used:   268025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)