BAC Information

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BAC

Clone NameMSMg01-151D14
Chromosome12 (Build37)
Map Location 26,481,391 - 26,481,901
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668719, Mboat2, EG629397, C330002I19Rik, Id2, LOC100042973, LOC100042974
Downstream geneLOC668726, Rnf144, Rsad2, Tyki, LOC668731, 1700020D12Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-151D14.T7 (MSMg01no151_d14.b1)MSMg01-151D14.TJ (MSMg01no151_d14.g1)
ACCAG353449AG353450
length767725
length of high quality
(start - end)
107 (160 - 266)510 (69 - 578)
definitionCHROMAT_FILE: MSMg01no151_d14.b1 PHD_FILE: MSMg01no151_d14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:14:58 2005CHROMAT_FILE: MSMg01no151_d14.g1 PHD_FILE: MSMg01no151_d14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:14:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAGAATTTGCGGCGCTAAACGACTCCTAAAGCANGAGGTCCGCGGAATTC
TGCAGGTGTCGCTATACCAGAGCTTAGGCATATTATAGAACTATAAACAA
TATTGTAAATCAATGAGCAACATAGAAGACCCAGACCTAGCAAGACAAAT
GCCACATGTCCTTTTTCATCTGCAATTCCTAGCACAAGTCTTCAGATATA
TGTACACAACACAGAGTAACTGAAGAGACCAGGAAAGGTGAAAGGGATTA
TAGGTGGTAGTGGTGGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXTTTCCCCCCCCCGCGGGGATAGTTCACTTATAGGTGGTAATCCC
GTTATTCCACTGATTCATTGCATATCCCCGGAGTGATTATGCGTATCCCA
CGTTCTCAATATTCCTTGATTCGTCTTTAGCCCCCGTTTTATGCCGCCTT
TCACATAGTATTCGACCCTCTTATCTTACCTCTCTCACCGCATTGAATTT
TATTTCAAAATATGTCCGTATTTAGCAGTCGTATCATCTCCGATTCTTCG
TTTTTCTCTTTTGCCCACTATATTTTCCCCGGCGTTCATTTTTCAATCCC
TCTTTCTCTTCGCATTCATCCCCGCCGTCCACTTCTATTCCTCCTCTCAC
TCCTTTTTTTACCCTTN
ATGCAGTGGTAGCCTGGCGGCGCCTGTTTCTGACTAGAGGTGAACTATAG
AATTTCAGAAAAAATTCGTTAATGGACATAAGCTATGAAAAGATAGAAAT
CAAATTGATTTTCTGTCATTTTTTATTTGTTTTTTTGTGAGGGATAAGTG
CATAAAATATATTAAATATTGAAATATACAATCCATTGTGAAGTTCCATG
GCTTCAAAATCACTATTCAAACAGTATAGAACTTCACTAGGATGCACAGA
TGTGAGTCTGGGTATTTTTTTGCTGTGTACAGTTTTTGTTATTTGTTTTT
TTATTTTTTTTTAATTTGCAGGGTTTTCTTTAAAATAGTAAAGTTTAGAA
AATTAAAATACAGATAATTAAAATATAGAAAATAAACGAAAAATGCCAGT
ATTCTGAACACCCATTTTCTGACACTGTGATAAAAATCCTCGAGATGAGT
GATTCATAAGCAGAAAGAGGTTATTTAGCTCAGAGCTAATGGCCAGGTCT
AAGATTATTTGACTCAGGTGTTATTGAGCCTGCAGGGCCGAACAGGATTC
ATGATCACAGCGAGTGCAGCCTCTGATGTAGAGGAGTCTGGGTAGCAAAC
AGAGAGAGAGGAAGGAACCAAAGGGCCAACATCTTTTCGTAGCTAGCTTT
TTCTAAGCTCCCTCTAAAATGTTCAAGTACATTCTCCTTTCGGGGAAATT
TAAATAGTAACCCATAACATTTTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no151_d14.g1 MSMg01no151_d14.g1 CHROMAT_FILE:
MSMg01no151_d14.g1 PHD_FILE: MSMg01no151_d14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:14:58 2005
         (510 letters)



>mm_chr12_26481192_26482101
          Length = 910

 Score =  957 bits (495), Expect = 0.0
 Identities = 507/511 (99%), Gaps = 1/511 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttaatggacataagctatgaaa-agatagaaatcaaattgattttctgtcattttttatt 59
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 200 ttaatggacataagctatgaaacagatagaaatcaaattgattttctgtcattttttatt 259

                                                                       
Query: 60  tgtttttttgtgagggataagtgcataaaatatattaaatattgaaatatacaatccatt 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 tgtttttttgtgagggataagtgcataaaatatattaaatattgaaatatacaatccatt 319

                                                                       
Query: 120 gtgaagttccatggcttcaaaatcactattcaaacagtatagaacttcactaggatgcac 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gtgaagttccatggcttcaaaatcactattcaaacagtatagaacttcactaggatgcac 379

                                                                       
Query: 180 agatgtgagtctgggtatttttttgctgtgtacagtttttgttatttgtttttttatttt 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 agatgtgagtctgggtatttttttgctgtgtacagtttttgttatttgtttttttatttt 439

                                                                       
Query: 240 tttttaatttgcagggttttctttaaaatagtaaagtttagaaaattaaaatacagataa 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tttttaatttgcagggttttctttaaaatagtaaagtttagaaaattaaaatacagataa 499

                                                                       
Query: 300 ttaaaatatagaaaataaacgaaaaatgccagtattctgaacacccattttctgacactg 359
           ||||||||||||||||||||||||||||||||||||||||| |  |||||||||||||||
Sbjct: 500 ttaaaatatagaaaataaacgaaaaatgccagtattctgaagagtcattttctgacactg 559

                                                                       
Query: 360 tgataaaaatcctcgagatgagtgattcataagcagaaagaggttatttagctcagagct 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tgataaaaatcctcgagatgagtgattcataagcagaaagaggttatttagctcagagct 619

                                                                       
Query: 420 aatggccaggtctaagattatttgactcaggtgttattgagcctgcagggccgaacagga 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 aatggccaggtctaagattatttgactcaggtgttattgagcctgcagggccgaacagga 679

                                          
Query: 480 ttcatgatcacagcgagtgcagcctctgatg 510
           |||||||||||||||||||||||||||||||
Sbjct: 680 ttcatgatcacagcgagtgcagcctctgatg 710


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 510
Length of database: 910
Length adjustment: 10
Effective length of query: 500
Effective length of database: 900
Effective search space:   450000
Effective search space used:   450000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)