BAC Information

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BAC

Clone NameMSMg01-151P05
Chromosome12 (Build37)
Map Location 79,173,122 - 79,173,486
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041772, Fut8, LOC230765, LOC666659
Downstream geneEG626215, Gphn, 4921509E07Rik, Mpp5, Atp6v1d, LOC100041878, Eif2s1, Plek2, 6330442E10Rik, Plekhh1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-151P05.T7 (MSMg01no151_p05.b1)MSMg01-151P05.TJ (MSMg01no151_p05.g1)
ACCAG353974AG353975
length717781
length of high quality
(start - end)
369 (48 - 416)138 (78 - 215)
definitionCHROMAT_FILE: MSMg01no151_p05.b1 PHD_FILE: MSMg01no151_p05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:15:54 2005CHROMAT_FILE: MSMg01no151_p05.g1 PHD_FILE: MSMg01no151_p05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:15:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCAAGCCGACCTGAGCTAATCAGGTAGCATTTGTAGATTGTGGCT
TTGCTTTGCGACGCTGCACTTGACTCTGGGTGTCACTTTGGAGTGCTTTT
TAGTGAACCGGTTTGGTTAGTTTAAAATTTAAAACTTTTTCAGAGCCATT
GATGCCTTTAAAACTCCTTTCTTCAGATGGTGTAGATTGAAAGAGTTGAA
TGAAATGATTTTGAAGACTAATGTCTTCTTCTGATACTCAAGATTAAACT
ATAATATTCCCAGCTTCTGAAATAATATAGACAAATGCCGATGTCTGGCA
CTTCCATTCAGACTTCGGTCTCACATTGTGTTGCTTAGGATAATTTTTAC
TTCTTAGATAGACAACCCACCCCAAAGATGGCAATAGCCATCATCTTAAT
AACAGACTTGTAGTGAGGAAAATGGAGCATGCAGATGCTTCTAGTTTCCA
TTTGTCTATGATACCCTGAACAAAAGGAAATGTTCTCTTCAGGGGAAAAA
AATGAGCTGCTACTCCATGTCCCTTCAGATCATCACCCCCACCAACCTCC
CACTTCCCCACCCCGTGTCTAATGCCACTGCCAACATCGATTTGCATTCT
TCTACAGAAAGCCAATGTCTTAAGAGGTTCCAAGAATTTTGTTCAAGTAA
ATACACAAGGATTTTCA
CCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCTTGACTGTTGAAATTTTTG
TTATAGTGTTCATCAGAGAAGAGCTGGGAGGTTTTTTGAGCTTCAAGAAT
ATGGATATCCCTCTAGAGACTGGAAGCCCCAGGGAGTTTAGAGGTCTGGT
GGGGTGGGGGTGGGAGNNNNNNNNNNTNNNNNNNNNNNNNNNNNNNTTNT
TNTTTTTTNNNTTTTTTTTTTTTTTTTCCTNCCNNTTTNNTTTTTTNNCC
TTTTTTNNTTTTTTTTTTTTTNNNNNNNNNTTNTTTTTTTTTTTTTNNNC
CTTTTTTNCCTTCCCCCCTTTTTTTCTTTTCTCTCCTGTTTTTCTTTTTC
TTTTTTTGGGGGGGCCCCCCCCCTGGTCAATTTANATAAATTATTTTTTC
ACCCCATTTCTTTTCTGCCCGTCTCTGTACTTCCTCCCTGGCATTCTCTG
TTTCCTGTTTTTTCCATCCCGCTCTTTTTCCAAATTTTCTTTCATGTTCT
TTACCGGCCAGGCCTGTCCGTGTTTTACTAACGCCTGCGCTTCTTTTTTT
TACCTTGTCTCCGGTGTATGTGTCCTATCCTACTCCCCCGTTTTCTTCCG
TTTTCTTGTGTTCTTTCGCCGTATCGTAACTAGGTCTTTGACTGCGCTCA
TCCCACTTTTGCTCGCCCTTTTCTGCTTCTTTTGCCTTATTTCATCCCGC
CCCTCTCCTCTCGTTATCTCGTCTATGAGTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no151_p05.b1 MSMg01no151_p05.b1 CHROMAT_FILE:
MSMg01no151_p05.b1 PHD_FILE: MSMg01no151_p05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:15:54 2005
         (369 letters)



>mm_chr12_79172918_79173686
          Length = 769

 Score =  698 bits (361), Expect = 0.0
 Identities = 364/365 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaagccgacctgagctaatcaggtagcatttgtagattgtggctttgctttgcga 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaagccgacctgagctaatcaggtagcatttgtagattgtggctttgctttgcga 264

                                                                       
Query: 65  cgctgcacttgactctgggtgtcactttggagtgctttttagtgaaccggtttggttagt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 265 cgctgcacttgactctgggtgtcactttggagtgctttttagtgaaccggtttggttggt 324

                                                                       
Query: 125 ttaaaatttaaaactttttcagagccattgatgcctttaaaactcctttcttcagatggt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttaaaatttaaaactttttcagagccattgatgcctttaaaactcctttcttcagatggt 384

                                                                       
Query: 185 gtagattgaaagagttgaatgaaatgattttgaagactaatgtcttcttctgatactcaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gtagattgaaagagttgaatgaaatgattttgaagactaatgtcttcttctgatactcaa 444

                                                                       
Query: 245 gattaaactataatattcccagcttctgaaataatatagacaaatgccgatgtctggcac 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gattaaactataatattcccagcttctgaaataatatagacaaatgccgatgtctggcac 504

                                                                       
Query: 305 ttccattcagacttcggtctcacattgtgttgcttaggataatttttacttcttagatag 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttccattcagacttcggtctcacattgtgttgcttaggataatttttacttcttagatag 564

                
Query: 365 acaac 369
           |||||
Sbjct: 565 acaac 569


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 369
Length of database: 769
Length adjustment: 9
Effective length of query: 360
Effective length of database: 760
Effective search space:   273600
Effective search space used:   273600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)