Query= MSMg01no152_d14.b1 MSMg01no152_d14.b1 CHROMAT_FILE:
MSMg01no152_d14.b1 PHD_FILE: MSMg01no152_d14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:16:16 2005
(681 letters)
>mm_chr12_86527334_86528414
Length = 1081
Score = 843 bits (436), Expect = 0.0
Identities = 439/440 (99%), Gaps = 1/440 (0%)
Strand = Plus / Plus
Query: 4 ggaattccctggaatcc-cacgttcactgtgtgctacgtggcaggccctgtgtgtgtctg 62
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 ggaattccctggaatccacacgttcactgtgtgctacgtggcaggccctgtgtgtgtctg 262
Query: 63 tgtgtgtacgtgtgatctcattcaagcctcacaggaggccctagaggttgatatcagctc 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tgtgtgtacgtgtgatctcattcaagcctcacaggaggccctagaggttgatatcagctc 322
Query: 123 tgtttcagccacaagaaaaatatgtcacatacaaaataagcaacttgccttgagttaccc 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tgtttcagccacaagaaaaatatgtcacatacaaaataagcaacttgccttgagttaccc 382
Query: 183 agtcagtaatagttcgagctagagtccttatcagatgactctaaagactggggtttctaa 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 agtcagtaatagttcgagctagagtccttatcagatgactctaaagactggggtttctaa 442
Query: 243 tctagacatccctgggacccccagggccaaagatggtggtgtctaaggtcccagctggtg 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 tctagacatccctgggacccccagggccaaagatggtggtgtctaaggtcccagctggtg 502
Query: 303 gcttctgccaggaggccctaggccctagacagaatgagagaacctggccctttccacatt 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 gcttctgccaggaggccctaggccctagacagaatgagagaacctggccctttccacatt 562
Query: 363 tactacctcttctccctccatccctcccacttttcttccttccttccttccttccttcct 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 tactacctcttctccctccatccctcccacttttcttccttccttccttccttccttcct 622
Query: 423 tccttccttccttccttcct 442
||||||||||||||||||||
Sbjct: 623 tccttccttccttccttcct 642
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 113
Number of extensions: 30
Number of successful extensions: 30
Number of sequences better than 10.0: 1
Number of HSP's gapped: 29
Number of HSP's successfully gapped: 1
Length of query: 681
Length of database: 1081
Length adjustment: 10
Effective length of query: 671
Effective length of database: 1071
Effective search space: 718641
Effective search space used: 718641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no152_d14.g1 MSMg01no152_d14.g1 CHROMAT_FILE:
MSMg01no152_d14.g1 PHD_FILE: MSMg01no152_d14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:16:16 2005
(470 letters)
>mm_chr12_86594899_86595768
Length = 870
Score = 862 bits (446), Expect = 0.0
Identities = 464/470 (98%)
Strand = Plus / Minus
Query: 1 tcttgaggctgaggatgtagctctgttgctagcatgcttcctggtgtggatgaaagcctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 tcttgaggctgaggatgtagctctgttgctagcatgcttcctggtgtggatgaaagcctg 637
Query: 61 ggttcaaccccagcactgtatgagactgagcgtgttctataagtccaggaagaggaaggc 120
||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct: 636 ggttcaaccccagcactgtataagactgagcatgttctataagtccaggaagaggaaggc 577
Query: 121 agtggtagcatcttcctcagctaaatagcaagttcaagaccagcctgagctgtttttcat 180
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 agcggtagcatcttccttagctaaatagcaagttcaagaccagcctgagctgtttttcat 517
Query: 181 gagaccgtcagaaacaaagtttaatattttcctccgaaccaaatgtgagtgtttttattt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 gagaccgtcagaaacaaagtttaatattttcctccgaaccaaatgtgagtgtttttattt 457
Query: 241 ctagtcataaatatgcaacctattcctaagttgacatattttaatctttatatttgcctg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 ctagtcataaatatgcaacctattcctaagttgacatattttaatctttatatttgcctg 397
Query: 301 tttgttttatttttgtttttgtttttgagacagtttttttattgtatagccctggctgac 360
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 tttgtcttatttttgtttttgtttttgagacagtttttttattgtatagccctggctgac 337
Query: 361 ctggaactctctatgtagaccaggttggctttgaattcacaagattatgttcttcctgag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 ctggaactctctatgtagaccaggttggctttgaattcacaagattatgttcttcctgag 277
Query: 421 tgccagggttaaagacatgtgtcgccatcactcctaattaatattgacat 470
|||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 276 tgccagggttaaagacatgtgtcgtcatcactcctaattaatattgacat 227
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 470
Length of database: 870
Length adjustment: 10
Effective length of query: 460
Effective length of database: 860
Effective search space: 395600
Effective search space used: 395600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
