BAC Information

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BAC

Clone NameMSMg01-152F09
Chromosome12 (Build37)
Map Location 119,475,069 - 119,637,478
singlet/doubletdoublet
Overlap geneSp4
Upstream genePtprn2, LOC432713, LOC100042461, Rapgef5, A930023M06Rik, Cdca7l, Dnahc11
Downstream geneLOC100042993, LOC668611, EG668615, LOC620665, Sp8, Abcb5, Itgb8, EG627557, LOC100043011
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-152F09.T7 (MSMg01no152_f09.b1)MSMg01-152F09.TJ (MSMg01no152_f09.g1)
ACCAG354246AG354247
length736733
length of high quality
(start - end)		585 (50 - 634)390 (81 - 470)
definitionCHROMAT_FILE: MSMg01no152_f09.b1 PHD_FILE: MSMg01no152_f09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:16:24 2005CHROMAT_FILE: MSMg01no152_f09.g1 PHD_FILE: MSMg01no152_f09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:16:24 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(119,475,069 - 119,475,647)(119,637,089 - 119,637,478)
sequence
NCCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGAT
CCGCGGAATTCTCATGAGTAGCACTTTTCCTGAAATAATAAAGAATGCAC
AAGAAAACATATACCTATTATATTCAAACTAATGATGGTTAAAAAAGGAA
GTAGGTAAAAACTTTAGTTTCCAAATGGTCTGTTTCAATAGTTATGATTC
TGTGTAAATACGTTCTAAAAACATGAAGTGTCTTACTAATGTTTAATCTA
TTAGAATAATCCAATTGCTTTCCATATGAAACTTTTGGCCATCTTTCCTA
ATAAGACACTGTTCTCTAAGACCCTTGCACAAACAATGAAATATATTTTC
AGTCAGTATTTGACTGAAAAGTATTCTGGATTTCCAAAAATAATTTTGCT
TCATAATATCATATCTATTATACATTTGTTAAGCTGTCTAGACCTTTAGG
GAAAATTCTGTTATTGGTATAACATAAAGATATCACTGTGATATATGTTC
CTAATTAGCCAAACACAGTACTAGAAATAAAGTAGGATTTGCCAATTTTT
AGTAAAGGAAAAAAGGATTATAATGTAATTAAAAATAATTTCCTGCTGGC
CTTGAAAATTATGATAATTCTTTCTTTGGCTACCACAGCATAAAGAATCC
TGCATATTGTCAACATAACTCATATTTACAGAACATGATATTACATACAT
CTATAATCTATGCAAGCACCTTCAATATGAACACTT

NNAACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGCACTTTTGATACATGA
GCTATTGGTACCTGTACATTTGGGATTTGTTATCTTCCAACTAGCAAGGT
AAGCGCTACACCTGGGATGTAATTCTAACCATGATGAATGCCATGGAAAA
ATATTTGTAATAAACAATATAAATAACACTATTTTAAACAATATATCTTA
TGATTTAAAAATCCAGACATATGCAGAACATTTGCAGAGCCAGAGAATAG
AATTTGTTTGGGGGTTTCAAAGTTGTATTCTCATATAAGTAGCCCCTTCT
AGAGTTATGGGCTGTGCATTTATGCCTCCCAATTCTCCACACAATTTGTG
TTATAGTCATTGCTGCTTTCTGACTCAGCCCCTAGTTCTCTGAACTTCGA
CTCTGTGATCTATTTCAGATCTGGGTAAAAAAATACTATAAGAAGCAATG
CACTTTGCTCTGAAATAAATACAACCACCATCACCTCATTATGCCTGCCT
GGCCACTAAGATGCGTGCTGAGCTTATTGTCCTGACAATCTGGCTACTGT
GACTTTCAATGACGACTATCAAAGCTCTACATGACTTTTTGTTTGACCCA
CCTGATACCCTGAGGAATGTAAAGTACAATTCTCTGTGCTCTCATCTTGC
GAATCCAAACATTCTTCCCTTTTCTGTTTAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no152_f09.b1 MSMg01no152_f09.b1 CHROMAT_FILE:
MSMg01no152_f09.b1 PHD_FILE: MSMg01no152_f09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:16:24 2005
         (585 letters)



>mm_chr12_119474863_119475847
          Length = 985

 Score = 1112 bits (575), Expect = 0.0
 Identities = 578/579 (99%)
 Strand = Plus / Plus

                                                                       
Query: 7   gaattctcatgagtagcacttttcctgaaataataaagaatgcacaagaaaacatatacc 66
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattctcatgagtagtacttttcctgaaataataaagaatgcacaagaaaacatatacc 266

                                                                       
Query: 67  tattatattcaaactaatgatggttaaaaaaggaagtaggtaaaaactttagtttccaaa 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 tattatattcaaactaatgatggttaaaaaaggaagtaggtaaaaactttagtttccaaa 326

                                                                       
Query: 127 tggtctgtttcaatagttatgattctgtgtaaatacgttctaaaaacatgaagtgtctta 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 tggtctgtttcaatagttatgattctgtgtaaatacgttctaaaaacatgaagtgtctta 386

                                                                       
Query: 187 ctaatgtttaatctattagaataatccaattgctttccatatgaaacttttggccatctt 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 ctaatgtttaatctattagaataatccaattgctttccatatgaaacttttggccatctt 446

                                                                       
Query: 247 tcctaataagacactgttctctaagacccttgcacaaacaatgaaatatattttcagtca 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 tcctaataagacactgttctctaagacccttgcacaaacaatgaaatatattttcagtca 506

                                                                       
Query: 307 gtatttgactgaaaagtattctggatttccaaaaataattttgcttcataatatcatatc 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 gtatttgactgaaaagtattctggatttccaaaaataattttgcttcataatatcatatc 566

                                                                       
Query: 367 tattatacatttgttaagctgtctagacctttagggaaaattctgttattggtataacat 426
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 tattatacatttgttaagctgtctagacctttagggaaaattctgttattggtataacat 626

                                                                       
Query: 427 aaagatatcactgtgatatatgttcctaattagccaaacacagtactagaaataaagtag 486
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 aaagatatcactgtgatatatgttcctaattagccaaacacagtactagaaataaagtag 686

                                                                       
Query: 487 gatttgccaatttttagtaaaggaaaaaaggattataatgtaattaaaaataatttcctg 546
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 gatttgccaatttttagtaaaggaaaaaaggattataatgtaattaaaaataatttcctg 746

                                                  
Query: 547 ctggccttgaaaattatgataattctttctttggctacc 585
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 747 ctggccttgaaaattatgataattctttctttggctacc 785


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 585
Length of database: 985
Length adjustment: 10
Effective length of query: 575
Effective length of database: 975
Effective search space:   560625
Effective search space used:   560625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no152_f09.g1 MSMg01no152_f09.g1 CHROMAT_FILE:
MSMg01no152_f09.g1 PHD_FILE: MSMg01no152_f09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:16:24 2005
         (390 letters)



>mm_chr12_119636889_119637678
          Length = 790

 Score =  754 bits (390), Expect = 0.0
 Identities = 390/390 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggcacttttgatacatgagctattggtacctgtacatttgggatttgttatcttccaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 caggcacttttgatacatgagctattggtacctgtacatttgggatttgttatcttccaa 531

                                                                       
Query: 61  ctagcaaggtaagcgctacacctgggatgtaattctaaccatgatgaatgccatggaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 ctagcaaggtaagcgctacacctgggatgtaattctaaccatgatgaatgccatggaaaa 471

                                                                       
Query: 121 atatttgtaataaacaatataaataacactattttaaacaatatatcttatgatttaaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 atatttgtaataaacaatataaataacactattttaaacaatatatcttatgatttaaaa 411

                                                                       
Query: 181 atccagacatatgcagaacatttgcagagccagagaatagaatttgtttgggggtttcaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 atccagacatatgcagaacatttgcagagccagagaatagaatttgtttgggggtttcaa 351

                                                                       
Query: 241 agttgtattctcatataagtagccccttctagagttatgggctgtgcatttatgcctccc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 agttgtattctcatataagtagccccttctagagttatgggctgtgcatttatgcctccc 291

                                                                       
Query: 301 aattctccacacaatttgtgttatagtcattgctgctttctgactcagcccctagttctc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 aattctccacacaatttgtgttatagtcattgctgctttctgactcagcccctagttctc 231

                                         
Query: 361 tgaacttcgactctgtgatctatttcagat 390
           ||||||||||||||||||||||||||||||
Sbjct: 230 tgaacttcgactctgtgatctatttcagat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 390
Length of database: 790
Length adjustment: 9
Effective length of query: 381
Effective length of database: 781
Effective search space:   297561
Effective search space used:   297561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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