BAC Information

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BAC

Clone NameMSMg01-152F16
Chromosome12 (Build37)
Map Location 98,116,242 - 98,116,638
singlet/doubletsinglet
Overlap genenone
Upstream gene1700019M22Rik, LOC100039664
Downstream geneEG628277, LOC382626, LOC100039743, LOC667732, LOC628351, LOC100039770
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-152F16.T7 (MSMg01no152_f16.b1)MSMg01-152F16.TJ (MSMg01no152_f16.g1)
ACCAG354259AG354260
length738742
length of high quality
(start - end)
535 (71 - 605)419 (124 - 542)
definitionCHROMAT_FILE: MSMg01no152_f16.b1 PHD_FILE: MSMg01no152_f16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:16:25 2005CHROMAT_FILE: MSMg01no152_f16.g1 PHD_FILE: MSMg01no152_f16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:16:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAAAGAAGATCCCCGAAAATGAAAAGATCCCTTCTGCTCGACTCAA
GCCCTGGGCTACCTGCCAGCAGAGCCTTGCCCAACACCTAAAGGGCCCAC
ACGGGACTCCCCACGGGATCCTAAGACATCTGGTGAGTGGAACACAGCGC
CTGCCCCAATCCAATCTCGCGGAACCTGAGACTGCGGTACATAGGGAAGC
AGGCTACCCGGGCTTGATCTGGGGCACAAACCCCTTCCACTCCACTCGAG
CCCCGGGCTACCTGCCAGCAGAGTCTTGCCCAACACCGAAAGGGCCCACA
CGGGACTCCCCACGGGATCCTAAGACCTCTGGTGAGTGGAACACAGCGCC
TGCCACAATCCAATCTCGCGGAATCTGAGACTGCGGTACATAGGGAAGCA
GGCTACCCGGGCTTGATCTGGGGCACAAACCCCTTCCACTCCACTCGAGC
CCCGGGCTACCTGACAGCAGAGTCTTGCCCAACACCCGTAAGGGCCCACA
CAGGATTCCACACGAGATCCTAAGACCTCTAGTGAGTGAAACACAACTTC
TGCCAGGAGTCTGGTTCGAACACTAGATATCTGGGTACCTGCCCTGCAAG
AAGAGAGCTTGCCTGCAGAGAATACTCTGCCCACTGAAACCAAGGAGAGC
GCTACCCTCCAGGTCTGCTTATAGAGGCTAACAGAGTC
CGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTAAGCACAGGCACCATGTCCTGCGGG
GGATGGTCAGCAGAATATGACACCCAATGGTTCTTCGGTGTGCTTTTGTA
ATGTGTCAGGGTATTTTAACCTTTATAGATCATTCCCATATGGCTTCTGA
TTTCATGGTTTAGTGGAATTGCTGTGTGCGCAGATATGTGTATTAATGTA
ATATATGAATTTCCTGTGTTTTTCTTCGGTTCTTTTTCTTTTTTTTGTGA
TTTTTTTTTTAGAATTAATTTTTTTAATTAGGTATTTTCCTCATTTACAT
TTCCAATGCTATCCAAAAAGTCCCCAATACACTCCCCCCCCCCACTCCCC
TACCCACCCACTCTCACTTTTTGGTTCTTTTTCTTTTGTATGTTACAGCC
TATTGTAATTTGTTTTATCCATCTGATTGCATTCCTTATTATTACTATTA
TTATTATTATTAGTATCATTATTATTATTATTATATGCTTATTTGCTTTC
ACTCCATACACACAACATGTCTGCCTTCGACTATGACAAAATAATGCGAT
GACCCCATAGTGGTTGTCCCCGGGCCTTATCATATTTATATTACCTATCC
CATATATTACATAACCCATTTTCTGTTTAGGCTAATTCCGCAATTTTCCC
CCTCTTAATTTTTTACTCTATACCACGATTTCCTCTTTCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no152_f16.g1 MSMg01no152_f16.g1 CHROMAT_FILE:
MSMg01no152_f16.g1 PHD_FILE: MSMg01no152_f16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:16:25 2005
         (419 letters)



>mm_chr12_98116042_98116859
          Length = 818

 Score =  663 bits (343), Expect = 0.0
 Identities = 392/419 (93%), Gaps = 22/419 (5%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccaatggttcttcggtgtgcttttgtaatgtgtcagggtattttaacctttatagatcat 60
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccaatggttcttcggtgtgcttctgtaatgtgtcagggtattttaacctttatagatcat 260

                                                                       
Query: 61  tcccatatggcttctgatttcatggtttagtggaattgctgtgtgcgcagatatgtgtat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcccatatggcttctgatttcatggtttagtggaattgctgtgtgcgcagatatgtgtat 320

                                                                       
Query: 121 taatgtaatatatgaatttcctgtgtttttcttcggttctttttcttttttttgtgattt 180
           ||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct: 321 taatgtaatatataaatttcctgtgtttttcttctgttctttttcttttttt-gtgattt 379

                                                                       
Query: 181 tttttttagaattaatttttttaattaggtattttcctcatttacatttccaatgctatc 240
           |||||  ||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 380 ttttt--agaattaatttttttaattaggtattttcctcatttacatttccagtgctatc 437

                                                                       
Query: 241 caaaaagtccccaatacactccccccccccactcccctacccacccactctcactttttg 300
           |||||||||||||||||||    |||||||||||||||||||||||||||||||||||||
Sbjct: 438 caaaaagtccccaatacac----cccccccactcccctacccacccactctcactttttg 493

                                                                       
Query: 301 gttctttttcttttgtatgttacagcctattgtaatttgttttatccatctgattgcatt 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 494 gttctttttcttttgtatgttacagcctattgtaatttgttttatccatctgattgtatt 553

                                                                      
Query: 361 ccttattattactattattattattattagtatcattattattattattatatgcttat 419
           | ||        |||||||||||||||||      ||||||||||||||||||||||||
Sbjct: 554 c-tt--------tattattattattatta------ttattattattattatatgcttat 597


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 419
Length of database: 818
Length adjustment: 9
Effective length of query: 410
Effective length of database: 809
Effective search space:   331690
Effective search space used:   331690
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)