BAC Information

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BAC

Clone NameMSMg01-154A06
Chromosome12 (Build37)
Map Location 26,455,126 - 26,572,347
singlet/doubletdoublet
Overlap geneLOC668726
Upstream geneLOC668719, Mboat2, EG629397, C330002I19Rik, Id2, LOC100042973, LOC100042974
Downstream geneRnf144, Rsad2, Tyki, LOC668731, 1700020D12Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-154A06.T7 (MSMg01no154_a06.b1)MSMg01-154A06.TJ (MSMg01no154_a06.g1)
ACCAG355425AG355426
length693693
length of high quality
(start - end)		541 (43 - 583)515 (74 - 588)
definitionCHROMAT_FILE: MSMg01no154_a06.b1 PHD_FILE: MSMg01no154_a06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:18:32 2005CHROMAT_FILE: MSMg01no154_a06.g1 PHD_FILE: MSMg01no154_a06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:18:32 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,572,009 - 26,572,347)(26,455,126 - 26,455,640)
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTGGGTGCTTTCATGTTCACATAATTTCCTTAAAAGTCCAGACTAAAAT
CTAGAGGACTTTAGAGGTTCAATTGTCTAGGGCTAGGGAGTGGGCCCTAA
AAGTGTGAGGATGGAGTTAAGATGCTCACCACCCACATTTCAGGAAGGCA
AGGGATACAGCTATACCTTCAGCCTTTTAAGACAGACACAGAGTCTCTCT
GGAGTAAGCTGGCTAGGTAGAGTAGCCATAGTGGGTGATCTCTGGCTCTG
ACTGAGAGACTGTTTAAATACAGTGGAAGAAGGATGGAGGATGATTCAGA
GCATCCACCTTGGGTCTGCACATACACGGGAACTACACATGTGCACATTC
ATTCACATTTATTCATGTACACACACACACACAGAGACACACACTAATGG
TAAAGGAATAGCGGTTTAAAATCTAATGGGTGCAGTAGTTAACTAGACAG
CTTAGTGTAGCCCAAACCCCACACCCACCAGAGGCCTTCGGTACTAGTGC
TTGACGAGACCTTGACCAGCTCCTGATAGGAAGCCTGGGATACCCTGCTT
CATAAGAGCATCATTGTATACCTGAGGTTTGGATTCATGCCAGAGAGTTG
AAGCTAACAATCACACTCGTCATGAATTTCCTTGTCTGTGTGC

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCCTCAGTTTGAGAATCTTCTCAGGGAG
AAGTACAAATTCATAGCCACTGAAGGAGAGAAACAGGTAGGGGGCCATCA
TGAGCTAAGCATCAAGTGGTCAGATCCCACCCACAGGAGGCTGTGAATTC
AAGCTTCTGGATTTTCATTACTCAATATGCCAAAGGCTCAGAAAAGCCAG
GTGTCACGCACATGACAGCAATAGCATGGCCATTCTACCTGGACACTGTG
GACTTTTGTGGCCCTAGGGCCTTCAAACCCACTCTCATCAGTGTCCCCTG
ATAGATCCAGCCTTGTTTAGCTTCTTTAGCACCCCTGCGTGCTCTCACTG
AGTTGTTGAGGGCACACTGTGGAGGCCTGACTTTCCTTGGCCACAGGACT
GAGGGGAATAGATCAGAAGATGTGGGGCCCATGTTGGTTGCATTAGCTTC
TCACGCTGAGTCTGTTGACCACAGTGTTCCTCACTCTGGGCAAAGTCATC
AAAATGTGAAATGTGTCACCGATTCACTGATGTCTGTACTAACAGAGTCT
TACTCCCATTCTTACCCCCAAGCAACTCCAGATGTCTGGGAAGCAAGTCC
CAGGCATAGGCTGAGTGGAAAAAGTGTGTATATGTATGTGCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no154_a06.b1 MSMg01no154_a06.b1 CHROMAT_FILE:
MSMg01no154_a06.b1 PHD_FILE: MSMg01no154_a06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:18:32 2005
         (541 letters)



>mm_chr12_26571407_26572347
          Length = 941

 Score =  656 bits (339), Expect = 0.0
 Identities = 339/339 (100%)
 Strand = Plus / Minus

                                                                       
Query: 203 ctctctggagtaagctggctaggtagagtagccatagtgggtgatctctggctctgactg 262
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 941 ctctctggagtaagctggctaggtagagtagccatagtgggtgatctctggctctgactg 882

                                                                       
Query: 263 agagactgtttaaatacagtggaagaaggatggaggatgattcagagcatccaccttggg 322
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 881 agagactgtttaaatacagtggaagaaggatggaggatgattcagagcatccaccttggg 822

                                                                       
Query: 323 tctgcacatacacgggaactacacatgtgcacattcattcacatttattcatgtacacac 382
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 821 tctgcacatacacgggaactacacatgtgcacattcattcacatttattcatgtacacac 762

                                                                       
Query: 383 acacacacagagacacacactaatggtaaaggaatagcggtttaaaatctaatgggtgca 442
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 761 acacacacagagacacacactaatggtaaaggaatagcggtttaaaatctaatgggtgca 702

                                                                       
Query: 443 gtagttaactagacagcttagtgtagcccaaaccccacacccaccagaggccttcggtac 502
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 gtagttaactagacagcttagtgtagcccaaaccccacacccaccagaggccttcggtac 642

                                                  
Query: 503 tagtgcttgacgagaccttgaccagctcctgataggaag 541
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 641 tagtgcttgacgagaccttgaccagctcctgataggaag 603


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 541
Length of database: 941
Length adjustment: 10
Effective length of query: 531
Effective length of database: 931
Effective search space:   494361
Effective search space used:   494361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no154_a06.g1 MSMg01no154_a06.g1 CHROMAT_FILE:
MSMg01no154_a06.g1 PHD_FILE: MSMg01no154_a06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:18:32 2005
         (515 letters)



>mm_chr12_26454926_26455840
          Length = 915

 Score =  996 bits (515), Expect = 0.0
 Identities = 515/515 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctcagtttgagaatcttctcagggagaagtacaaattcatagccactgaaggagagaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cctcagtttgagaatcttctcagggagaagtacaaattcatagccactgaaggagagaaa 260

                                                                       
Query: 61  caggtagggggccatcatgagctaagcatcaagtggtcagatcccacccacaggaggctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caggtagggggccatcatgagctaagcatcaagtggtcagatcccacccacaggaggctg 320

                                                                       
Query: 121 tgaattcaagcttctggattttcattactcaatatgccaaaggctcagaaaagccaggtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgaattcaagcttctggattttcattactcaatatgccaaaggctcagaaaagccaggtg 380

                                                                       
Query: 181 tcacgcacatgacagcaatagcatggccattctacctggacactgtggacttttgtggcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcacgcacatgacagcaatagcatggccattctacctggacactgtggacttttgtggcc 440

                                                                       
Query: 241 ctagggccttcaaacccactctcatcagtgtcccctgatagatccagccttgtttagctt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctagggccttcaaacccactctcatcagtgtcccctgatagatccagccttgtttagctt 500

                                                                       
Query: 301 ctttagcacccctgcgtgctctcactgagttgttgagggcacactgtggaggcctgactt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctttagcacccctgcgtgctctcactgagttgttgagggcacactgtggaggcctgactt 560

                                                                       
Query: 361 tccttggccacaggactgaggggaatagatcagaagatgtggggcccatgttggttgcat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tccttggccacaggactgaggggaatagatcagaagatgtggggcccatgttggttgcat 620

                                                                       
Query: 421 tagcttctcacgctgagtctgttgaccacagtgttcctcactctgggcaaagtcatcaaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tagcttctcacgctgagtctgttgaccacagtgttcctcactctgggcaaagtcatcaaa 680

                                              
Query: 481 atgtgaaatgtgtcaccgattcactgatgtctgta 515
           |||||||||||||||||||||||||||||||||||
Sbjct: 681 atgtgaaatgtgtcaccgattcactgatgtctgta 715


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 515
Length of database: 915
Length adjustment: 10
Effective length of query: 505
Effective length of database: 905
Effective search space:   457025
Effective search space used:   457025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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