BAC Information

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BAC

Clone NameMSMg01-154I23
Chromosome12 (Build37)
Map Location 112,722,999 - 112,802,744
singlet/doubletdoublet
Overlap geneGm266, Eif5
Upstream genePpp2r5c, 9430024F10Rik, Dync1h1, 1700001K19Rik, Hsp90aa1, Wdr20a, Rage, 2810455K09Rik, LOC100041649, 2810452K22Rik, 4930573I19Rik, Ankrd9, 6030440G07Rik, Rcor1, 4930595D18Rik, Traf3, Amn, Cdc42bpb, A230065H16Rik, 1200009I06Rik, Tnfaip2
Downstream geneMark3, Ckb, 6720458F09Rik, Bag5, 2810002N01Rik, Klc1, Xrcc3, Zfyve21, Ppp1r13b, LOC100041886, 2010107E04Rik, BC048943, Tdrd9, A530050D06Rik, Kif26a, A730018C14Rik, A530016L24Rik, Tmem179
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-154I23.T7 (MSMg01no154_i23.b1)MSMg01-154I23.TJ (MSMg01no154_i23.g1)
ACCAG355818AG355819
length699691
length of high quality
(start - end)
263 (81 - 343)183 (77 - 259)
definitionCHROMAT_FILE: MSMg01no154_i23.b1 PHD_FILE: MSMg01no154_i23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:19:13 2005CHROMAT_FILE: MSMg01no154_i23.g1 PHD_FILE: MSMg01no154_i23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:19:13 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(112,802,482 - 112,802,744)(112,722,999 - 112,723,180)
sequence
CAAAATTTGCGGCGCTAAACGACTCCTATATTCAGAAATCCGCGGAATTC
TCACATTCCTCCCCCCTTGAGATAAGGTGAGACAGCTCTCTGGCCCTTGA
GCTCCTGACTCTCCTGTCTCTGCTTCCCATCTGACCACAGAAGTGCTTGA
ATTATAGACCTGCCAATCACTGGCATTCTGACTTGGGTCTTCATGCCTGT
GTGGCCAGTGCTTTCCCAAATGAGTTATCTCCCCAGATCGAGAGAAAGCT
TCCCAAATCTGGAAGACACACCCAGTGTCCCCAACACAATGAGTGTAATT
TCAACACCATACCAAGGACAATTACTGAGTCTTCTGCTTCTGGCAGTGGT
GGATTTCTCGGCATCTGACGCTTACTTTGGGGTAATTGGGCCCTAGGTAG
CACGTAGTCTTAAACGAGTAGCTTATGGGCTCTACTGTCAGGCAACTTGC
TCCCTGAATGTAGACCAGATGTGTCCTGCTTTATAGTAAATATGCCGGCT
ATTTGTTTATATGCCTGTTTATTTGGTCTATAGTCTTACTCTTATGCAAT
TATCATCTTTAACTATCATAATTTGCATGATACCCATCATGGATCATTAT
AACACATTCCACCTTTTCATCCTCTTTTCACCAATACATAACCCATTATT
TTTGCCTCTCTTCTTTATTTTATATCCTTTCCTATTTTACCCTCCTGTC
CATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXTCCCGAAAATCTGTTGTGGAAAATCTCACTGCTGGATTCAAG
GCTGTAAAGGAGAGAAAACCGCCCTAAAGCTGAAGAAAACCTTTCATCAG
TGCACACTACCCAACCAATCAAAAGTTCCCGAGTTGCTATTTACAAAAAT
TAGATGGGTGGGTGGGAGTCCGAAACAGATTGAACAGGGCTGTAAATTTT
CTCTACGGGAAAATGTAAATTTTGGTTTCTTCTTGTAGCACAGTCGGAGG
TCAACAGAGGGGATGTTGCATAGTTTTTGCCTAGCATTGAAGAAAGACAG
GCAGGCAGATTGAAGCACCATCACCCTTTGCGGTGAATACACAGAAAAGC
AGCCACTGTTGGATACGTTTCTGGAATAAGGCACTGAGCCGGCGGACCGT
GGCGCGATAGCCAATGAACCTCTCGTCGGACCACGTCTCCAGGGCGTTGG
CGGGGATGCGGTAAGCCTCCTGTCCCGGCGGGGCCAGGGCCTCCATCTCG
CGCATCATCTGCGTGAACACGCGGACCATCATCGTTTTGATCTTGTTCGA
GCATTCAAGGAACGGGAAATGCCACTCGCTGGCCTGCGCGAGATCCTGTT
CCGACAGATCCTGGCGCTTGGCTACCAAAGCCGTGCCTGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no154_i23.b1 MSMg01no154_i23.b1 CHROMAT_FILE:
MSMg01no154_i23.b1 PHD_FILE: MSMg01no154_i23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:19:13 2005
         (263 letters)



>mm_chr12_112802126_112802788
          Length = 663

 Score =  493 bits (255), Expect = e-144
 Identities = 261/263 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gacagctctctggcccttgagctcctgactctcctgtctctgcttcccatctgaccacag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 gacagctctctggcccttgagctcctgactctcctgtctctgcttcccatctgaccacag 560

                                                                       
Query: 61  aagtgcttgaattatagacctgccaatcactggcattctgacttgggtcttcatgcctgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 aagtgcttgaattatagacctgccaatcactggcattctgacttgggtcttcatgcctgt 500

                                                                       
Query: 121 gtggccagtgctttcccaaatgagttatctccccagatcgagagaaagcttcccaaatct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 gtggccagtgctttcccaaatgagttatctccccagatcgagagaaagcttcccaaatct 440

                                                                       
Query: 181 ggaagacacacccagtgtccccaacacaatgagtgtaatttcaacaccataccaaggaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 ggaagacacacccagtgtccccaacacaatgagtgtaatttcaacaccataccaaggaca 380

                                  
Query: 241 attactgagtcttctgcttctgg 263
           |  ||||||||||||||||||||
Sbjct: 379 aaaactgagtcttctgcttctgg 357


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 263
Length of database: 663
Length adjustment: 9
Effective length of query: 254
Effective length of database: 654
Effective search space:   166116
Effective search space used:   166116
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no154_i23.g1 MSMg01no154_i23.g1 CHROMAT_FILE:
MSMg01no154_i23.g1 PHD_FILE: MSMg01no154_i23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:19:13 2005
         (183 letters)



>mm_chr12_112722799_112723381
          Length = 583

 Score =  337 bits (174), Expect = 3e-97
 Identities = 180/182 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaaaatctcactgctggattcaaggctgtaaaggagagaaaaccgccctaaagctgaaga 60
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 201 gaaaatctcactgctggattcaaggctgtaaaggagagaaaaccgtcctaaagctgaaga 260

                                                                       
Query: 61  aaacctttcatcagtgcacactacccaaccaatcaaaagttcccgagttgctatttacaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaacctttcatcagtgcacactacccaaccaatcaaaagttcccgagttgctatttacaa 320

                                                                       
Query: 121 aaattagatgggtgggtgggagtccgaaacagattgaacagggctgtaaattttctctac 180
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaattagacgggtgggtgggagtccgaaacagattgaacagggctgtaaattttctctac 380

             
Query: 181 gg 182
           ||
Sbjct: 381 gg 382


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 183
Length of database: 583
Length adjustment: 8
Effective length of query: 175
Effective length of database: 575
Effective search space:   100625
Effective search space used:   100625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)