BAC Information

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BAC

Clone NameMSMg01-154N07
Chromosome12 (Build37)
Map Location 95,244,516 - 95,244,771
singlet/doubletsinglet
Overlap geneEG633639
Upstream gene2610022K04Rik-ps
Downstream geneLOC217786
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-154N07.T7 (MSMg01no154_n07.b1)MSMg01-154N07.TJ (MSMg01no154_n07.g1)
ACCAG356013AG356014
length713714
length of high quality
(start - end)
245 (68 - 312)544 (73 - 616)
definitionCHROMAT_FILE: MSMg01no154_n07.b1 PHD_FILE: MSMg01no154_n07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:19:34 2005CHROMAT_FILE: MSMg01no154_n07.g1 PHD_FILE: MSMg01no154_n07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:19:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXAATCGGAACGGAGCCGCGGAATT
CCTGAATTCATCAGATCCCATTTATAATTTAGTTATTTTGTTTTGTTTTT
TAAAGATTAACTTCCTGAGTTCATTATACATATTGGATATGAGCCCACTA
TCAGATGCAGGGTTAGTGAAGATTTTTTTTCTGGCTGTAGGATGCTGATT
ATCGCCAGACAATGCAGCAGACATTAGCAGCAGAAAGACAAAGCATATCC
TTTCTTTCTCTCAAATGTATTATTTAACGGGACAGACATAACACAATTAT
GTACTCTGGTGTTAGTATATACGTATGTGATCTTGTCTTAGCCCAATAGG
GAAAAAAAACCCCACAAAACAAAACAAAAACAACTAAACAAAACAACAAC
AAGAAACCCAAGTTGGATTTATATTTGGGAGATGAAAGGAATGAGGGCCT
ATGAGTGATGACTTGGATGAGACAGTATTGTACACTTGGGTAAGAAGTGG
GAGGGGTGACTAGCCAAAGAAAGAAAGGGGCAAAATATATGACAGCAAAT
GAGGAGCCCATGTCTGTCTGTGTCTGATAAGTGTTGTTCACCTGCTAAAG
ATTCACATTAACTTCTAAGTATGATCTCACTGTCCACACTACATAGTTTG
TAGATATTTGGCATACACAAGACCGGCCTCATCTTTTTGTAATAATTACC
CCATCTGCACTGC
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAAAGTCAGCCTGATCTACACAGTGAGTT
CCAGGACAGCCAGGGGTACACAGAGGAACCCTGTCTTGAAAAGCCAAAAA
AAAAATATGAACAATGAAGAAATAATTTGAAAGAAATAATTTGTCATATT
TTACTAATTTTAGTCCAAATATATTAGACCTAAATCACTCCTTAAAATCA
GCCTCCAAATGATGACACCATTGCATACACTAGCAAGAGTTTGCTGAAAG
GACCCTGATATAGCTGTCTCTTGTGAGACTAGGCCGGGGCCTAGCAAACA
CAGAAGTGGATGCTCACAGTCAGCTATTGGATGGATCACAGGGCCCCCAA
TGGAGGAGTTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAACCCTA
TAGGTGCAACAACATTATGAACTAACCAGTACCCCGGAGCTCTTGACTCT
AGCTGCATATGTATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGA
GGCAGGCCCATTGGTCGTGCAAACTTTATATGCCCCAGTACAGGGAAATG
CCAGGGCCAAAAAGTGGGAGTGGGTGGTTAGGGCAGTTGCCCTCCCTCAC
ACCCTTTTTTTTTCCTTCCCACCAATTATTTCTTCTCCCTTTTCTTCCCC
CCCCTTTTCCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no154_n07.b1 MSMg01no154_n07.b1 CHROMAT_FILE:
MSMg01no154_n07.b1 PHD_FILE: MSMg01no154_n07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:19:34 2005
         (245 letters)



>mm_chr12_95244183_95244827
          Length = 645

 Score =  429 bits (222), Expect = e-125
 Identities = 243/256 (94%), Gaps = 11/256 (4%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccatttataatttagtta----------ttttgttttgttttttaaagattaacttcctg 50
           ||||||||||||||||||          ||||||||||||||||||||||||||||| ||
Sbjct: 589 ccatttataatttagttattttgttttgttttgttttgttttttaaagattaacttcttg 530

                                                                       
Query: 51  agttcattatacatattggatatgagcccactatcagatgcagggttagtgaagattttt 110
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 agttcattatacatattggatatgagcccactatcagatgcagggttagtgaagattttt 470

                                                                       
Query: 111 tttctggctgtaggatgctga-ttatcgccagacaatgcagcagacattagcagcagaaa 169
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 469 tttctggctgtaggatgctgatttatcgccagacaatgcagcagacattagcagcagaaa 410

                                                                       
Query: 170 gacaaagcatatcctttctttctctcaaatgtattatttaacgggacagacataacacaa 229
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 gacaaagcatagcctttctttctctcaaatgtattatttaacgggacagacataacacaa 350

                           
Query: 230 ttatgtactctggtgt 245
           ||||||||||||||||
Sbjct: 349 ttatgtactctggtgt 334


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)