BAC Information

Click to search

BAC

Clone NameMSMg01-155P08
Chromosome12 (Build37)
Map Location 78,829,087 - 78,829,537
singlet/doubletsinglet
Overlap genenone
Upstream geneChurc1, Gpx2, Rab15, Fntb, Max, LOC100041765, LOC100041772, Fut8, LOC230765
Downstream geneLOC666659, EG626215, Gphn, 4921509E07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-155P08.T7 (MSMg01no155_p08.b1)MSMg01-155P08.TJ (MSMg01no155_p08.g1)
ACCAG356821AG356822
length725773
length of high quality
(start - end)
454 (46 - 499)383 (77 - 459)
definitionCHROMAT_FILE: MSMg01no155_p08.b1 PHD_FILE: MSMg01no155_p08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:58 2005CHROMAT_FILE: MSMg01no155_p08.g1 PHD_FILE: MSMg01no155_p08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCCATCCCATTATCCTGAAAGCACGGTTCTGTGCCCGCTCCTCTCT
AACAAAGAAAGTAATTTCAACTTCTCTTTAAGCAGTAGTCAAACGCCTCC
GTTCTGTTTTCCCACGGGGAGTTCTTTAAAGCACTGATTATGTACAATAG
GACTTAGCTTATCAGAGCCAATAGCAATGATTTGACAAGAGGCAATTTAT
AAAAACCGTTTTCGTGATAAGAATTTCCCCAGAAACTCTTTTCCAAGAGA
AAGAGTTAGAGCCTCTCAACACAGAAAGGTGGTGACACTGCGAAGAACCT
GCCTGGGCGTTTGAGCTTTGGTGCACCACAGCTCTGAGGAGACCATTTCC
AAAGGGCCACCAGCAGACGTCCAGCTTCTAATCTTTAGTGAGGCAAGGTT
ACCAGGATCTTACCCTCCTGGACTCAGAAAGGATGCTGTCCACGGACCAT
CCAAACCCAGGTATACCACAGAACAGAAACTTCATCTAGCTCAATGATGA
CTTTTCTTTCCGAGGACATGGCTAAGTTATGGTGTTTGTATATTGCCAAC
AAAATCCAATCACCATTAGGTTAAGTGTATTTTAGAGTATATATGTTAGC
AGTACTCATTAAAACTGTATTTGTGCATTATGAGTACTCATTGAATGAAT
GACAATGACCATTTAGAGTTTATAG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTGCTATACTTGCAGACAGGTACC
TAGCACAGCTGTCATCAGAGGCTTTACTTAGCATCTGATGGAAACTGATG
CAGAGATCCACAGCCAAACTTAAGTGGAGCTTTAGGGAATCCTGTGGAAG
AGAGGAACTGTTACATATGTAACAGTTGTGCAGCTGGGTCTTCATGTGGG
ACTCCTAAAGTGCGAGCAGGGTCTGTGTCTGACTATATTGGTTGCCTTTG
GATTCCTTTCCCCTAACTGGGCTGCCTCATCTCTAGTTCAATAGAAGATG
CACCTGGTCTTCCTGCAACTTGATATGCCAAGGCTGGTTGACATCCAAGG
GAGGCCTCCTCTTTTCTGAGGAGAAGGGGAAGAGGGGTGGCTGCCCCCCC
CCCCCCCTTCCCCCCCCCCTTTTTTCCCCCCCCTCTCCCCCCTTCTGCTT
TCCCCCCTTCCCCATTTTCCCCGCCCCCCTTCTCCCCCTTTCTCCCCCCC
GTCACCCTCCACCCCCCCCTGTCTCCCTCTGCGCCCGACCCCCCCTCATA
CCCCCCGCCCTCGTTCCACTTTCCCTCCCGCCTCCCCCCCTTTGTCGACC
TCGTTCCCGCCCCCCCCCCCTCCCTCCCCCCCCACCTACTCCCCCCGCCC
CCTCTTGTCACCTTACTCCCTCGATCATATGTCCGTCTCCCACACCTCCC
TTTTCTCTCCCCCTTCCCTACCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no155_p08.b1 MSMg01no155_p08.b1 CHROMAT_FILE:
MSMg01no155_p08.b1 PHD_FILE: MSMg01no155_p08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:20:58 2005
         (454 letters)



>mm_chr12_78828884_78829737
          Length = 854

 Score =  841 bits (435), Expect = 0.0
 Identities = 447/451 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcccatcccattatcctgaaagcacggttctgtgcccgctcctctctaacaaaga 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcccatcccattatcctgaaagcacggttctgtgcccgctcctctctaacaaaga 263

                                                                       
Query: 64  aagtaatttcaacttctctttaagcagtagtcaaacgcctccgttctgttttcccacggg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aagtaatttcaacttctctttaagcagtagtcaaacgcctccgttctgttttcccacggg 323

                                                                       
Query: 124 gagttctttaaagcactgattatgtacaataggacttagcttatcagagccaatagcaat 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gagttctttaaagcactgattatgtacaataggacttagcttatcagagccaatagcaat 383

                                                                       
Query: 184 gatttgacaagaggcaatttataaaaaccgttttcgtgataagaatttccccagaaactc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gatttgacaagaggcaatttataaaaaccgttttcgtgataagaatttccccagaaactc 443

                                                                       
Query: 244 ttttccaagagaaagagttagagcctctcaacacagaaaggtggtgacactgcgaagaac 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 444 ttttccaagagaaagagttagagcctctcaacacagaaaggtggtgacactgccaagaac 503

                                                                       
Query: 304 ctgcctgggcgtttgagctttggtgcaccacagctctgaggagaccatttccaaagggcc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ctgcctgggcgtttgagctttggtgcaccacagctctgaggagaccatttccaaagggcc 563

                                                                       
Query: 364 accagcagacgtccagcttctaatctttagtgaggcaaggttaccaggatcttaccctcc 423
           |||||||||| ||||||||||||||  |||||||||||||||||||||||||||||||||
Sbjct: 564 accagcagacatccagcttctaatccctagtgaggcaaggttaccaggatcttaccctcc 623

                                          
Query: 424 tggactcagaaaggatgctgtccacggacca 454
           |||||||||||||||||||||||||||||||
Sbjct: 624 tggactcagaaaggatgctgtccacggacca 654


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 454
Length of database: 854
Length adjustment: 10
Effective length of query: 444
Effective length of database: 844
Effective search space:   374736
Effective search space used:   374736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)