BAC Information

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BAC

Clone NameMSMg01-155P24
Chromosome12 (Build37)
Map Location 31,026,500 - 31,163,812
singlet/doubletdoublet
Overlap geneSntg2
Upstream geneMyt1l, LOC100043496, Pxdn, Tpo
Downstream geneTmem18, LOC100043055, Acp1, Sh3yl1, LOC629656, 9030611O19Rik, LOC668781, LOC100043065, LOC100043514, EG629667, LOC100043068, Lamb1-1, Dld, LOC668786, Slc26a3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-155P24.T7 (MSMg01no155_p24.b1)MSMg01-155P24.TJ (MSMg01no155_p24.g1)
ACCAG356853AG356854
length731748
length of high quality
(start - end)
483 (40 - 522)380 (77 - 456)
definitionCHROMAT_FILE: MSMg01no155_p24.b1 PHD_FILE: MSMg01no155_p24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:21:01 2005CHROMAT_FILE: MSMg01no155_p24.g1 PHD_FILE: MSMg01no155_p24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:21:01 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(31,163,331 - 31,163,812)(31,026,500 - 31,026,879)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTAT
TTTTGTCCCAGAGATACCTTAGGGACTTATGAACAGTTATTTTAATGTAA
AAACACACATTTCTACCAGGATATTTTAAGTTCACCTAAGGCTACCAACT
TTATTGACCTCTTTATAATTGCGTTTTCATTACTCTGGTGCTTTGATGAT
GAGTCCGATCATAATAGGCCTCACCGCAGGGCCTGTTGAAGCTTAATTGT
TGGTCCATGTCCTGTCAGATGACTTACCAAGGAAGGTTCAACAGGACGTA
TTAAAAGCAGCTAGTGTTGAGAAGGGAAACGGAGTAGGGAGGACCCTACT
TCTTCAGAGGTGGTGATTCGGGCTCTGCATTCAGGTGACAGGCATCAATG
CTAATTACCGGAGCGAACACCTCTGAGAGTTAGGGATGGACATAGGAACT
TCACAGGTATATGTACAGGTATTTACATAGATTCACAGAGCAGGTTCTGC
CTCATCCAGTGTGTCACACCCTCATTCAGCCCTATTGTGCGCCAAATTAT
TATCATATTCCCACCATGGCTTACTTGTTGCTTCTGGTTGCCTTAGGAGG
AAGCCGTCTGCCGAATACCCATCTAGACAATGGAGACTGACTATGAGATA
GGGGAGCACTGTCGTAGAGCTGTTGAGATTCCTTTGTCTTTGGAAGGCAC
ACTTAACGCCCTGGTTCCTTTATTGAGCCCC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATGGCACAGCAGGGAGACAGGTCA
CAGCCTGAACCCATGGCATAGCAGGGAGACAGATCACAGGATACATCCTT
CCCACATATGAAAAATAAAGAAGGAGCAATTTCCTCTTTGCAAACAGATT
ATAGTTTCCTGGAGATCTGGCCTGAGATAATCAATTGTTTCAAAGATTCA
GAAAGAAGGAGAAGAAGGCAGCATGTAAAGGAACGCGGATCTCATGACAC
GCAGTGAGACACGTGGGCAGAAGTCTTGTCTCACAGATTACTGGGCTTGC
TACCTGACCTGTAATAGCATGTTTTCCAAGTGCAGCCTCAGACACATGTT
TACTCTAAAACCATATTGTCAAAGATAGTAACTCTAGCTGTATTTGTATT
ATGAAAGACCAAAAAGAAGACTACATTTCCTCCCTGAATATATACCATGT
ATAGTCTGCCTGTGGAATGCTTAGCAACCGTCAACAGAAATGAACATATT
CAAAACTGCGGTCCAATCAGAAAACAATCCTTAAAATATTTCTGTTAGAA
ATTAATATCAAGCCCATGGTGTACCAAATCAATAACCCCTACCGCCGAAA
AATGAGTGCTTTGAAAACCTTTGCCCCTAATAAAGACTTTCATATTCTTT
ACTGATTGGACTACATCCTAGAGACCAGGGTTAACAATGTGCCCATAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no155_p24.b1 MSMg01no155_p24.b1 CHROMAT_FILE:
MSMg01no155_p24.b1 PHD_FILE: MSMg01no155_p24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:21:01 2005
         (483 letters)



>mm_chr12_31163130_31164012
          Length = 883

 Score =  893 bits (462), Expect = 0.0
 Identities = 477/482 (98%)
 Strand = Plus / Minus

                                                                       
Query: 2   gaattcttatttttgtcccagagataccttagggacttatgaacagttattttaatgtaa 61
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 683 gaattcttatttttgtcccagtgataccttagggacttatgaacagttattttaatgtaa 624

                                                                       
Query: 62  aaacacacatttctaccaggatattttaagttcacctaaggctaccaactttattgacct 121
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 623 aaacacacatttctaccaggatattttgagttcacctaaggctaccaactttattgacct 564

                                                                       
Query: 122 ctttataattgcgttttcattactctggtgctttgatgatgagtccgatcataataggcc 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 ctttataattgcgttttcattactctggtgctttgatgatgagtccgatcataataggcc 504

                                                                       
Query: 182 tcaccgcagggcctgttgaagcttaattgttggtccatgtcctgtcagatgacttaccaa 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 tcaccgcagggcctgttgaagcttaattgttggtccatgtcctgtcagatgacttaccaa 444

                                                                       
Query: 242 ggaaggttcaacaggacgtattaaaagcagctagtgttgagaagggaaacggagtaggga 301
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 443 ggaaggttcaacaggacgtattaaaagcagcaagtgttgagaagggaaacggagtaggga 384

                                                                       
Query: 302 ggaccctacttcttcagaggtggtgattcgggctctgcattcaggtgacaggcatcaatg 361
           ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 ggaccctacttcagcagaggtggtgattcgggctctgcattcaggtgacaggcatcaatg 324

                                                                       
Query: 362 ctaattaccggagcgaacacctctgagagttagggatggacataggaacttcacaggtat 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ctaattaccggagcgaacacctctgagagttagggatggacataggaacttcacaggtat 264

                                                                       
Query: 422 atgtacaggtatttacatagattcacagagcaggttctgcctcatccagtgtgtcacacc 481
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 atgtacaggtatttacatagattcacagagcaggttctgcctcatccagtgtgtcacacc 204

             
Query: 482 ct 483
           ||
Sbjct: 203 ct 202


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 483
Length of database: 883
Length adjustment: 10
Effective length of query: 473
Effective length of database: 873
Effective search space:   412929
Effective search space used:   412929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no155_p24.g1 MSMg01no155_p24.g1 CHROMAT_FILE:
MSMg01no155_p24.g1 PHD_FILE: MSMg01no155_p24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:21:01 2005
         (380 letters)



>mm_chr12_31026300_31027079
          Length = 780

 Score =  727 bits (376), Expect = 0.0
 Identities = 379/380 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggcacagcagggagacaggtcacagcctgaacccatggcatagcagggagacagatca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atggcacagcagggagacaggtcacagcctgaacccatggcatagcagggagacagatca 260

                                                                       
Query: 61  caggatacatccttcccacatatgaaaaataaagaaggagcaatttcctctttgcaaaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caggatacatccttcccacatatgaaaaataaagaaggagcaatttcctctttgcaaaca 320

                                                                       
Query: 121 gattatagtttcctggagatctggcctgagataatcaattgtttcaaagattcagaaaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gattatagtttcctggagatctggcctgagataatcaattgtttcaaagattcagaaaga 380

                                                                       
Query: 181 aggagaagaaggcagcatgtaaaggaacgcggatctcatgacacgcagtgagacacgtgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggagaagaaggcagcatgtaaaggaacgcggatctcatgacacgcagtgagacacgtgg 440

                                                                       
Query: 241 gcagaagtcttgtctcacagattactgggcttgctacctgacctgtaatagcatgttttc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcagaagtcttgtctcacagattactgggcttgctacctgacctgtaatagcatgttttc 500

                                                                       
Query: 301 caagtgcagcctcagacacatgtttactctaaaaccatattgtcaaagatagtaactcta 360
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caagtgcagtctcagacacatgtttactctaaaaccatattgtcaaagatagtaactcta 560

                               
Query: 361 gctgtatttgtattatgaaa 380
           ||||||||||||||||||||
Sbjct: 561 gctgtatttgtattatgaaa 580


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 380
Length of database: 780
Length adjustment: 9
Effective length of query: 371
Effective length of database: 771
Effective search space:   286041
Effective search space used:   286041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)