BAC Information

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BAC

Clone NameMSMg01-156A11
Chromosome12 (Build37)
Map Location 44,978,135 - 44,978,447
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039059, ENSMUSG00000066507
Downstream geneLOC100039081, LOC664854, Dnajb9, LOC100039062, Pnpla8, Nrcam, EG620025, Stxbp6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-156A11.T7 (MSMg01no156_a11.b1)MSMg01-156A11.TJ (MSMg01no156_a11.g1)
ACCAG356874AG356875
length756769
length of high quality
(start - end)
319 (46 - 364)562 (77 - 638)
definitionCHROMAT_FILE: MSMg01no156_a11.b1 PHD_FILE: MSMg01no156_a11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:21:04 2005CHROMAT_FILE: MSMg01no156_a11.g1 PHD_FILE: MSMg01no156_a11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:21:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACATCCTTAAAAGATTATCTTCTAGCTATGCCATTATTATAAATG
TCCTAGCAGCAGGGGCACTACTCTAATTTATTAGCAACCCACTTGTGCTC
CCCTAGCCCACAAATTTTGATCCCTAATTGGTAGTTGTCTTTAGGTTTCA
AACAGACAAAATGAGATGAATTGAAAGCAAGTTGTCATTGACCAGAAATC
AAGGCTGCTTCTTGTTACATTGGGGGTATAGTTTTAATGGCAAATAATAA
CAACAGTAATTATGCTAATGGTTAACCTGGAGCAAAGTGTGAAAAGTCTT
GAGTTCAGAGTATTGTTCTAAACACCACCACCACCCAAGATGTACAAAAT
TTGCTGGTAATAGGACAAAGATTAGGTCTAATGCAGTCTTACAGACTCAT
TTATACAGGTATAACTCTGAAATATGATATTTTATTCTTTTTATTTGACA
CATGTTTAGCACATGTACATGGTTGTATTTGTGTAAAAAATAGAGAAACA
GGTATGTGAATGAACTGAGACACACCTGCTCTGTGATGGAGACCTTTACT
TTCAGGAAAACAAACAAACAAAAAACCAAAAAAAAAAAACACCCAGTGAA
AGAAAGGATGCTTTAAGTGTGGGCACAAAAGCCGTGCAATTATATGGTCA
AATATATTAATTCTTAGCCCATCCTAGTTGAATTACGGCAAAGCAAAGCA
GCCTGG
NCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAGAATCTAGACATCAACAAATCA
AATAACCCAATTAAAAAATGAGGTATACGTCTAAACAGAATTCTTAACAG
ACAAATCTCTAGTGGCTGAGAAGAAGAAAAAATGTTAAATATTCTTAGCC
ATTAGAAACTCAAACCAAATTATCTCTGAGATTCCATCATACATCAGTCA
GAATGGCTAAGATGAAATACTCAAGTGACAGCTCTTATTGGCAAAGATAT
GGAGCAAGAGAAACATTTCCTCCATTGCTGTTAGGAGTATAAATGATACA
AGAACTTTCAAAATCAATATAAAACTTTCTACCTCAAGATGCAGCTCTAC
AATTCCTGGGCATGTACCTAGAGTATGTTCCACGATATCACAAGGACACT
TGCTCAACTATGTTCATAGCAGCTTTATTCATAATAGCCAGAACCTGGGG
ACAATCTAGATGTTCCTTAACTGAAGAATGGATAAAGAAAATGTGGAACA
TTTACACAATAAACTATTACTTATCTATTAAAAATAATGACATTCTAAAA
TTTCAGGCATATGGATACAACTAGGAAAGAGCATGCTGAGTGAGGCAGCC
CAGACCCAGAAAGACAAACTTCATATGTACTCCCTTGTGACTATTACCAA
TAAAGTAAAGTATACTTGCTACAATGCCCAGACACAAAGAGGCCAGTGAA
CAAGGGAGGTTTCAAGGCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no156_a11.b1 MSMg01no156_a11.b1 CHROMAT_FILE:
MSMg01no156_a11.b1 PHD_FILE: MSMg01no156_a11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:21:04 2005
         (319 letters)



>mm_chr12_44977931_44978649
          Length = 719

 Score =  598 bits (309), Expect = e-175
 Identities = 312/313 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcacatccttaaaagattatcttctagctatgccattattataaatgtcctagcag 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 gaattcacatccttaaaagattatcttctagctatgccattattataaatgtcctagcag 458

                                                                       
Query: 65  caggggcactactctaatttattagcaacccacttgtgctcccctagcccacaaattttg 124
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 caggagcactactctaatttattagcaacccacttgtgctcccctagcccacaaattttg 398

                                                                       
Query: 125 atccctaattggtagttgtctttaggtttcaaacagacaaaatgagatgaattgaaagca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 atccctaattggtagttgtctttaggtttcaaacagacaaaatgagatgaattgaaagca 338

                                                                       
Query: 185 agttgtcattgaccagaaatcaaggctgcttcttgttacattgggggtatagttttaatg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 agttgtcattgaccagaaatcaaggctgcttcttgttacattgggggtatagttttaatg 278

                                                                       
Query: 245 gcaaataataacaacagtaattatgctaatggttaacctggagcaaagtgtgaaaagtct 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 gcaaataataacaacagtaattatgctaatggttaacctggagcaaagtgtgaaaagtct 218

                        
Query: 305 tgagttcagagta 317
           |||||||||||||
Sbjct: 217 tgagttcagagta 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)