BAC Information

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BAC

Clone NameMSMg01-156D17
Chromosome12 (Build37)
Map Location 79,347,593 - 79,417,270
singlet/doubletdoublet
Overlap geneGphn
Upstream geneFut8, LOC230765, LOC666659, EG626215
Downstream gene4921509E07Rik, Mpp5, Atp6v1d, LOC100041878, Eif2s1, Plek2, 6330442E10Rik, Plekhh1, Pigh, LOC666722, Arg2, Vti1b, Rdh11, Rdh12, Zfyve26, Rad51l1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-156D17.T7 (MSMg01no156_d17.b1)MSMg01-156D17.TJ (MSMg01no156_d17.g1)
ACCAG357023AG357024
length754746
length of high quality
(start - end)		356 (389 - 744)289 (73 - 361)
definitionCHROMAT_FILE: MSMg01no156_d17.b1 PHD_FILE: MSMg01no156_d17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:21:18 2005CHROMAT_FILE: MSMg01no156_d17.g1 PHD_FILE: MSMg01no156_d17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:21:18 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,416,915 - 79,417,270)(79,347,593 - 79,347,881)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGCAAGGCTTTAACCAAAATCAAAAAGTGTTTTATCTTCAATAATG
AACTATATGAAAAGGAAATCAAGGAACAGTTTCTGGTATAATAACTAAAA
CATACAAAGGCAGATGTATGTTCAAAGATATATAAGAACTCTACTAAAAA
ATCTATAAAGAACTGATGAAAGGAATTGAAAAGGACACAAATAAGTGGAA
AGATAGCATATGTTAATGAGAAGAAAGCCTTAGTGGTACTGAAATGTCCA
TATTACATAACACGAGTGAAATATACTTTTAAAATACCACTAGTACTCTC
CATAGAACTATAAATTTTTCTAACATTCTCGACCGACAGAATAACTTCAA
ATAGTCAAAGCATATATGTACAACAATAACAACAAAGAGCAGTAGGCATT
GTGATTAAACTTTAAAAACCACTACAAAGCTACAGTAACCAAAACATCAA
GGCATTGACATAGGCATGGAAGTGGCTCTGTCTGGGCTGTGGTACCAGTT
TCATGTAGCTCAGGCCTCATCACATAACATGGACCAAGAAGCAGGGAAGA
AGAGACAGAACCAATGTAAGTACTGTCATCAAAGGCCCACCCATAGTTAT
CTATTTCTGCCATCTAGGTGACACTATGAAAATTCCATATCCTTAAGATT
TGAACCATAAACTGGACACATAAGCCTGTGGAAACTATTTCAGATTATAA
CAAT

CGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTTTCTTCCTTTTATTTCAATTGATCTG
TTTTTGTATTTAAGGCATATTTTCTAGAAATATATAGTTGGGTCTTACTC
ATATTGTTCAGTTTTTAAAATCTTTGTTTTATTTTCAGTATTTATTCTGT
TTACATTTAATATAATTACTGACATAGCTAGGTATAAATCTGTTATCTCA
CGGTTTAATTTTATTTCATTTGTTCTTTTAAAACCTTTTTCTTCTTTCCT
GATTATTTTTCTAATTCATAAGTTTTCTAAGATTTATTTTCTACATTAGT
TTTTCAGTTTACTTTCTTCCGCACCCCCCCCATTTAGGAATTCTATGTAT
TTGAAGGAACACTCTTGACTTGTAAGTGTATCTTAAACACTTTACTATTT
TCTGAGCAATACTAAACCTTCATTTATTACCTTCTGCCATTTGTATACTT
TTGTGTGGGTGTGCATTCAGGTGCCTGTGGAGGCTAGAAGAGGGTATAGA
GATAGAGTTTCAGGCAGTTGTTAATTGGTTGATATGGGTGCTAGCAAGTG
AACTTTTATAAGATGTAAGATTAAGAAGCACTCTTAACCAATGAGCCATC
TCTCCAGGCCCACTATTTTAAAAATTAAAAAAAAAAGATAATTTAGGTTA
TGTGTGTAGCTCTCTTGTAATTCCAGAAGCAACATGGATATAAATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no156_d17.b1 MSMg01no156_d17.b1 CHROMAT_FILE:
MSMg01no156_d17.b1 PHD_FILE: MSMg01no156_d17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:21:18 2005
         (356 letters)



>mm_chr12_79416583_79417338
          Length = 756

 Score =  681 bits (352), Expect = 0.0
 Identities = 355/356 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaataacttcaaatagtcaaagcatatatgtacaacaataacaacaaagagcagtaggca 60
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 688 gaataacttcaaatagtcaaagcatatatgtagaacaataacaacaaagagcagtaggca 629

                                                                       
Query: 61  ttgtgattaaactttaaaaaccactacaaagctacagtaaccaaaacatcaaggcattga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 ttgtgattaaactttaaaaaccactacaaagctacagtaaccaaaacatcaaggcattga 569

                                                                       
Query: 121 cataggcatggaagtggctctgtctgggctgtggtaccagtttcatgtagctcaggcctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 cataggcatggaagtggctctgtctgggctgtggtaccagtttcatgtagctcaggcctc 509

                                                                       
Query: 181 atcacataacatggaccaagaagcagggaagaagagacagaaccaatgtaagtactgtca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 atcacataacatggaccaagaagcagggaagaagagacagaaccaatgtaagtactgtca 449

                                                                       
Query: 241 tcaaaggcccacccatagttatctatttctgccatctaggtgacactatgaaaattccat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 tcaaaggcccacccatagttatctatttctgccatctaggtgacactatgaaaattccat 389

                                                                   
Query: 301 atccttaagatttgaaccataaactggacacataagcctgtggaaactatttcaga 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 atccttaagatttgaaccataaactggacacataagcctgtggaaactatttcaga 333


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 356
Length of database: 756
Length adjustment: 9
Effective length of query: 347
Effective length of database: 747
Effective search space:   259209
Effective search space used:   259209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no156_d17.g1 MSMg01no156_d17.g1 CHROMAT_FILE:
MSMg01no156_d17.g1 PHD_FILE: MSMg01no156_d17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:21:18 2005
         (289 letters)



>mm_chr12_79347393_79348081
          Length = 689

 Score =  551 bits (285), Expect = e-161
 Identities = 288/289 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttttcttccttttatttcaattgatctgtttttgtatttaaggcatattttctagaaata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttttcttccttttatttcaattgatctgtttttgtatttaaggcatattttctagaaata 260

                                                                       
Query: 61  tatagttgggtcttactcatattgttcagtttttaaaatctttgttttattttcagtatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tatagttgggtcttactcatattgttcagtttttaaaatctttgttttattttcagtatt 320

                                                                       
Query: 121 tattctgtttacatttaatataattactgacatagctaggtataaatctgttatctcacg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tattctgtttacatttaatataattactgacatagctaggtataaatctgttatctcacg 380

                                                                       
Query: 181 gtttaattttatttcatttgttcttttaaaacctttttcttctttcctgattatttttct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 381 gtttaattttatttcatttgttcttttaaaacctttttcttctttcctgcttatttttct 440

                                                            
Query: 241 aattcataagttttctaagatttattttctacattagtttttcagttta 289
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aattcataagttttctaagatttattttctacattagtttttcagttta 489


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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