BAC Information

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BAC

Clone NameMSMg01-156N08
Chromosome12 (Build37)
Map Location 117,250,139 - 117,250,404
singlet/doubletsinglet
Overlap genenone
Upstream geneIgh, EG629919, Ighv1-48, Ighv1-49, EG640506, Ighv1-50, Ighv1-51, Ighv1-52, Ighv1-53, EG629930, EG668534, EG211331, Ighv1-55, EG634662, Ighv1-56, EG629936, Ighv8-7, Ighv1-57, Ighv8-8, Ighv1-58, EG432708, Ighv1-60, Ighv1-61, Ighv1-62, EG668544, EG238448, EG668549, EG432709, EG668552, Ighv1-63, Ighv1-64, Ighv8-10, Ighv1-65, EG668554, EG636462, LOC217924, Ighv1-66, EG435328, Ighv1-68, LOC435329, EG668563, Ighv1-69, Ighv8-12, LOC619863, EG638634, EG619886, Ighv1-72, EG668575, EG668577, EG668582, Ighv1-75, Ighv1-77, Ighv1-78, GA_x5J8B7W27DS-1519-2216, Ighv1-79, LOC668586, Ighv1-80, Ighv1-81, Olfr241-ps1, Ighv1-83, EG434609, LOC668595, EG668597, EG668599
Downstream geneZfp386, Vipr2, LOC676058, Wdr60, LOC100042963, D12Ertd551e, D430020J02Rik, Ncapg2, Rnu7-ps1, Ptprn2, LOC627375
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-156N08.T7 (MSMg01no156_n08.b1)MSMg01-156N08.TJ (MSMg01no156_n08.g1)
ACCAG357472AG357473
length748733
length of high quality
(start - end)
270 (46 - 315)228 (78 - 305)
definitionCHROMAT_FILE: MSMg01no156_n08.b1 PHD_FILE: MSMg01no156_n08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:22:04 2005CHROMAT_FILE: MSMg01no156_n08.g1 PHD_FILE: MSMg01no156_n08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:22:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGATTATTCATGTCTATTGTAATCTAAATTGAAGTTCACAAATTG
GATGCACCTAATATTGCAGCTTAGAAGGAGGAGGACCAATTGAATGCATC
TCCTCTTTTCTGCAACTTATCAGAATCCATGTGATGTCCTGTGAATTGTC
AGTTAGCAGGGTAACATCCTCAGGGCACCAGTGAATTCTGATGATATAGG
AACATTTATCCCTACTATCCAGAAGGTTAGATTGTTTTATCTTGGCATTC
TAGAACCACTAAGGTTCTGGTTATATGTCTATAATGCTGTTCTTCATACT
CCAATCTTGTATTGTTTATGCCCCCCCCCCCCCCCAATGCACATGCGTTC
ATGCCTACTTATGTACACCCCCCCCTCTCATAATGTATTCCATTCACAAA
TGTCTATTCTCCTTAGAATGTAAATAGATAACATAAGCATAGTCTCCTAA
CTTATTCTACTATTAGCACCATATTCATTTGCTACCCTGTTGTAATGTCC
ACGTTATAGCCTTCCTTGACTATTTGCACACTATTGACCCTATTATCCCC
TCTACCCCCTTATCTTCCTTTACCCCTGCTTTACACATTCATTTTCTCGA
CTTCATCTCTTCCAAATGTTTCTCATTTATTTTACAACCGCCCCTTAACA
TTTTTATACATCACCTATCTCACCACTTGAGCTTTTTTTCAATAATCT
TGAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXATACAGTTGAATCCTTCTTAACA
GTCTGCTTTACGGGAACCTCTATTACCGCGACCCGCAGTTCTGGTTCTGG
AATGAGGGATCTTCCCTGCGCCAGTCCCGAGTTTTTTCTCGTCCCGGAAT
TCGGCACCAATTGTTATTAGACGCGTTCTCACGACCGGCCAGGAAAGACG
CAACAAACCAGAATCTTCTGCGGCCAAACTTTATTGCTTACATCTTCAGG
AGCAGGAGTGCACGAAGCAAGATATTTAGAAAACGATAACCTGTCCCTCT
TAAGGAGAATTTTCCTTCGCTTCGCAGGGCAAACCCCCTGATTGTCTGCA
GCCCATCGTCCGAGTTGCCCCCCCCCCAACAAAAAAAGAACAAGTAGTCT
CAAAATACCCTTGGCACATGCGCAGATTATTTGTTTACCACTTATAATAC
CGCTGTCAGCGCCATCTTGTAACGCCGAATGTGGCCGCGGTTCCCAACAC
AACGCCAGGCCATTGAATTCTGCGGCCCAGTCGCGATTATGGCATTTTAT
CCCTCCTCCCCAGCCTGATCAGTCTCTCCCTGCCCGCCCCTATAGAAGCT
TTTAGCCTTTTTGACCCCCATCTCCATTATGTCCTTTTACTCCTAGCAAG
GCTTATTTGACGCCCTTATTTCCCCTTTAACCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no156_n08.b1 MSMg01no156_n08.b1 CHROMAT_FILE:
MSMg01no156_n08.b1 PHD_FILE: MSMg01no156_n08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:22:04 2005
         (270 letters)



>mm_chr12_117249935_117250604
          Length = 670

 Score =  514 bits (266), Expect = e-150
 Identities = 266/266 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagattattcatgtctattgtaatctaaattgaagttcacaaattggatgcacct 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagattattcatgtctattgtaatctaaattgaagttcacaaattggatgcacct 264

                                                                       
Query: 65  aatattgcagcttagaaggaggaggaccaattgaatgcatctcctcttttctgcaactta 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aatattgcagcttagaaggaggaggaccaattgaatgcatctcctcttttctgcaactta 324

                                                                       
Query: 125 tcagaatccatgtgatgtcctgtgaattgtcagttagcagggtaacatcctcagggcacc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tcagaatccatgtgatgtcctgtgaattgtcagttagcagggtaacatcctcagggcacc 384

                                                                       
Query: 185 agtgaattctgatgatataggaacatttatccctactatccagaaggttagattgtttta 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agtgaattctgatgatataggaacatttatccctactatccagaaggttagattgtttta 444

                                     
Query: 245 tcttggcattctagaaccactaaggt 270
           ||||||||||||||||||||||||||
Sbjct: 445 tcttggcattctagaaccactaaggt 470


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 270
Length of database: 670
Length adjustment: 9
Effective length of query: 261
Effective length of database: 661
Effective search space:   172521
Effective search space used:   172521
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)