BAC Information

Click to search

BAC

Clone NameMSMg01-157A24
Chromosome12 (Build37)
Map Location 100,178,623 - 100,333,676
singlet/doubletdoublet
Overlap geneTtc8, EG667779
Upstream geneLOC667746, Galc, Gpr65, Kcnk10, Spata7, Ptpn21, Zc3h14, Eml5, LOC100039845
Downstream geneChes1, LOC100039892, 2610021K21Rik, Tdp1, LOC100040041, Kcnk13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-157A24.T7 (MSMg01no157_a24.b1)MSMg01-157A24.TJ (MSMg01no157_a24.g1)
ACCAG357640AG357641
length746756
length of high quality
(start - end)
327 (30 - 356)299 (59 - 357)
definitionCHROMAT_FILE: MSMg01no157_a24.b1 PHD_FILE: MSMg01no157_a24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:22:20 2005CHROMAT_FILE: MSMg01no157_a24.g1 PHD_FILE: MSMg01no157_a24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:22:20 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(100,333,357 - 100,333,676)(100,178,623 - 100,178,921)
sequence
GCTXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATTATGTAAGG
CAGGCAAACTTCAAACCCATGGCAGTGCTCCTGCCCAAGTGCTGGAATTC
TGAGCATGAGCCCCCACAATTTGCTATCCTAGCCTCTTGACAGTGCCCCC
ATCGGCTTTATCCCTCCAGGCTACCTGTGCTCTGGAGTCCCCTCTCCAAG
CATCAGTCAATGGCATGACCTTTTTGAACACAGGACCCCAGCATCACATG
CTCCTCTCTCTATAGACTCCCCCCTCTTCTCCCAAATCCTCACAGAGCAC
CCTTGGTTTCTCTCCCCACTCCCATTCCCCTTGTCTTGTATAGCTGCAAT
AGTTCTTCAGAGAAACCACTTCTGCTCCAGGCCCTTCTTTCCTGAATTTC
TCTTTCCCTTTCTGTTTGGCTGACATCCTCTCTCTGCTTGGATGGTGGCA
TCTTTAGGGAACTCACAGAGCACCTTAGGCTGTCCTTAAGGCACCTATCA
CCATCGGAACCAAGTATCTGTAAAATGATTTGCACATCAGCTATTCTCTG
CTAGCCTGGAAGGCTCAAGAGAGGCCCGGAACGTTATTTGTCACCGTGTC
TTAAGGACCATCTAAAGCTCTCGAACACTTCCTAGCACAGAACGGATACT
TGATAAATTAATAATTTGGGGTGGGTTTGAGGTAGGGATGAGTGGAAGAA
ATTTTCTAAACTATAGGTTGCTTTCATCTTTGCCCAACCTACTGAG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXATAGAGAATAAAGAAGTAGATGTTCCTCCTGACTTCTGATGT
ACTTCATCTACTGGGGGCAGGGGAGAATGATGGACTCGCTTCCCTGGGTT
TGCTTAGCTCAGCACAGAAAATTCACATCCTCTTAACACTTGAGAGGTTA
GTAGGGAGCTAGATAGCTAGCAAAACAGAGTGGACAGTAAAATAGTAACA
ACTCAAAACTAGTTAAAATATATGTTCATAGGTGTTTAATGGCTAAGTCT
GTAAATGATACCTAGTATAAAAACCTGGCTTTTAAAAAGTTTGATTTAAT
ATGAATATGGTGTACATGCCCATAATTCCAGCACCCAGAAGGCTAAATCA
GGGAGTCTAGAGTTCAAGGCCATCCTGGGCTACATAAACTGGGGGGTGGA
GGTTTGGGTGGATCAGGGAGGGAAGCAGACTGGCTGATAAAGATTTAAGT
TATTCAAATCATGACCCATAAACCTTTATTGGCTCCTCGGTGTCAGAATT
GAAATCCCTAAATCTTACTGGTCACTTGTGCCCTCTGATTGGTCTCTTGG
TCTATACTGATTCTCCAGAATATTCCCAACTTATTGCGAGTTTCCTAAGA
CCTTGTGAGCCCGTGTTTTCTGAACTCACAGTTTACCCCTCTCTTTATTT
ATATTACTATACTCCCTGTTCCTCGACAACCTCTTTGTTTTACTGGCCTT
GTACTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no157_a24.b1 MSMg01no157_a24.b1 CHROMAT_FILE:
MSMg01no157_a24.b1 PHD_FILE: MSMg01no157_a24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:22:20 2005
         (327 letters)



>mm_chr12_100333069_100333795
          Length = 727

 Score =  596 bits (308), Expect = e-175
 Identities = 317/320 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcattatgtaaggcaggcaaacttcaaacccatggcagtgctcctgcccaagtgc 63
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 608 ggaattcattatgtaaggcaggcaaacttcaaacccatggcagtgttcctgcccaagtgc 549

                                                                       
Query: 64  tggaattctgagcatgagcccccacaatttgctatcctagcctcttgacagtgcccccat 123
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 548 tggaattctgagcatgagcccccacaatttgctgtcctagcctcttgacagtgcccccat 489

                                                                       
Query: 124 cggctttatccctccaggctacctgtgctctggagtcccctctccaagcatcagtcaatg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 cggctttatccctccaggctacctgtgctctggagtcccctctccaagcatcagtcaatg 429

                                                                       
Query: 184 gcatgacctttttgaacacaggaccccagcatcacatgctcctctctctatagactcccc 243
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 428 gcatgacctttttgaacacaggaccctagcatcacatgctcctctctctatagactcccc 369

                                                                       
Query: 244 cctcttctcccaaatcctcacagagcacccttggtttctctccccactcccattcccctt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 cctcttctcccaaatcctcacagagcacccttggtttctctccccactcccattcccctt 309

                               
Query: 304 gtcttgtatagctgcaatag 323
           ||||||||||||||||||||
Sbjct: 308 gtcttgtatagctgcaatag 289


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 327
Length of database: 727
Length adjustment: 9
Effective length of query: 318
Effective length of database: 718
Effective search space:   228324
Effective search space used:   228324
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no157_a24.g1 MSMg01no157_a24.g1 CHROMAT_FILE:
MSMg01no157_a24.g1 PHD_FILE: MSMg01no157_a24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:22:20 2005
         (299 letters)



>mm_chr12_100178423_100179121
          Length = 699

 Score =  547 bits (283), Expect = e-160
 Identities = 295/299 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   atagagaataaagaagtagatgttcctcctgacttctgatgtacttcatctactgggggc 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 201 atagagaataaagaagtagatgttcctcctgacttctgatgtacttcatctattgggggc 260

                                                                       
Query: 61  aggggagaatgatggactcgcttccctgggtttgcttagctcagcacagaaaattcacat 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct: 261 tggggagaatgatggactcgcttccctgggtttgcttagctcagcacagaaagtttacat 320

                                                                       
Query: 121 cctcttaacacttgagaggttagtagggagctagatagctagcaaaacagagtggacagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctcttaacacttgagaggttagtagggagctagatagctagcaaaacagagtggacagt 380

                                                                       
Query: 181 aaaatagtaacaactcaaaactagttaaaatatatgttcataggtgtttaatggctaagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaaatagtaacaactcaaaactagttaaaatatatgttcataggtgtttaatggctaagt 440

                                                                      
Query: 241 ctgtaaatgatacctagtataaaaacctggcttttaaaaagtttgatttaatatgaata 299
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctgtaaatgatacctagtataaaaacctggcttttaaaaagtttgatttaatatgaata 499


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 299
Length of database: 699
Length adjustment: 9
Effective length of query: 290
Effective length of database: 690
Effective search space:   200100
Effective search space used:   200100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)