BAC Information

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BAC

Clone NameMSMg01-158O14
Chromosome12 (Build37)
Map Location 32,898,758 - 32,899,045
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043065, LOC100043514, EG629667, LOC100043068, Lamb1-1, Dld, LOC668786, Slc26a3, Cbll1, Slc26a4, LOC100043531, Bcap29, Dus4l, LOC100043081, Gpr22, Hbp1, Prkar2b, Pik3cg
Downstream gene2010109K11Rik, LOC100043548, Pbef1, LOC100043553, 4933406C10Rik, Sypl, LOC100043109, 1110049B09Rik, Atxn7l4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-158O14.T7 (MSMg01no158_o14.b1)MSMg01-158O14.TJ (MSMg01no158_o14.g1)
ACCAG358993AG358994
length703706
length of high quality
(start - end)
314 (34 - 347)288 (64 - 351)
definitionCHROMAT_FILE: MSMg01no158_o14.b1 PHD_FILE: MSMg01no158_o14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:24:31 2005CHROMAT_FILE: MSMg01no158_o14.g1 PHD_FILE: MSMg01no158_o14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:24:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCAACTG
AGGAATATCAAATGGCTGAGAAGTACCTAAAAAAATGTTCAACATCCTTA
ATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCACCTCACACC
TGTCATAATGGCTAAGATCAAAACCTCAGGTGACAGCAGATGCTATCAAG
GATGTGGAGAAAGAGGAACACTCCTCCATTGCTGGTGGGACTGCAAGCTG
GTACAACCACTCTGGAAATCAGTTTGCTGTTTCCTCAGAAAATTGGACAT
AGTTCTACTGGAAGATCCAGTAATACCACTCCTGGGCATATATCCTTAAA
ATCNCTCCTNANGCATAACGACACATGCTCCAGTATGTTCATAGCAGCTT
TATTTACAATAAACAAAAAATGGAAAGAACCCAGAGGTTCCTCAACATAG
GAATGGACACAGAAAATGTGGTACATTTACACAATAGAGTACTAGTCAGC
TATTAAAAACAATCAATTTATGAAATTCTTAGACAAATGGATGAATCTGG
AGGATACCATCTTGATTGAGATAACCTAATCACAAAAGAACACATATGAT
ATGCACTCACTGATAAGTGCATATTAGACCAAAAGCTCAGAATCCTTTTT
AGAAGGGGGACCAAAATACCCATGGAAGGAGTTACAGAGACAAAGTTCGG
AGC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXATGGACAAAAGGAAATGAATGCACATGTCAATGTATA
TGTGGGTGGAGATCTTCAGCATCAGCTTGAATAAGACCCCATTCCCCTTC
AGATGAGCCCCCAAAGTAATCCTGTTCCTTTTATAAAACCTTTCCTGGCC
CTATGGGTCTACAGCTAATACAAAGATGGAGCAATGGTAGAGGGGTCAGA
GTGGGTAAGAACTGCCCCAATTAAAAGAGGATTCATATAGGAATCTGCAA
GAATAGGGGGTACCCAGATGCTTAAGGAATTTTAGAAGTGGCTTACTGAT
TGTTTTACCGCCCCCCCCCCCACCTGGTAAAATGGCTTTGTATCTACTAC
TCATACCCAAAGTGAACATTATAAGTGTGGTCAGATGAGTCTCACTCATC
AACAGTGACAGCAGCATCCCAGCAAGAAACCATAGGACTGGTGACCCAAA
GGCCCCTTCCCCTTCAAATCAGAACATACCACTTTAATTGAAAGGGAAGA
GATGCAAGAAGGGAGGAGAAAGGAGAAAGGAGGATATTTCAAAGAGAGAA
GAGGAATTGTAGTTGCAGGAGGCCAATGCCCGCACACTCGCAGGCATGCA
CTCACACATGGTATTTCCTGACCTTCACAACTTTCTTGTGATCTGATAGA
CAAAGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no158_o14.g1 MSMg01no158_o14.g1 CHROMAT_FILE:
MSMg01no158_o14.g1 PHD_FILE: MSMg01no158_o14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:24:32 2005
         (288 letters)



>mm_chr12_32898558_32899245
          Length = 688

 Score =  549 bits (284), Expect = e-161
 Identities = 287/288 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atggacaaaaggaaatgaatgcacatgtcaatgtatatgtgggtggagatcttcagcatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 atggacaaaaggaaatgaatgcacatgtcaatgtatatgtgggtggagatcttcagcatc 429

                                                                       
Query: 61  agcttgaataagaccccattccccttcagatgagcccccaaagtaatcctgttcctttta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 agcttgaataagaccccattccccttcagatgagcccccaaagtaatcctgttcctttta 369

                                                                       
Query: 121 taaaacctttcctggccctatgggtctacagctaatacaaagatggagcaatggtagagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 368 taaaacctttcctggccctatgggtctacagctaatacaaagatggatcaatggtagagg 309

                                                                       
Query: 181 ggtcagagtgggtaagaactgccccaattaaaagaggattcatataggaatctgcaagaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 ggtcagagtgggtaagaactgccccaattaaaagaggattcatataggaatctgcaagaa 249

                                                           
Query: 241 tagggggtacccagatgcttaaggaattttagaagtggcttactgatt 288
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 tagggggtacccagatgcttaaggaattttagaagtggcttactgatt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)