BAC Information

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BAC

Clone NameMSMg01-160D11
Chromosome12 (Build37)
Map Location 27,622,677 - 27,622,957
singlet/doubletsinglet
Overlap genenone
Upstream geneRnf144, Rsad2, Tyki, LOC668731, 1700020D12Rik
Downstream geneSox11, LOC100043009
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-160D11.T7 (MSMg01no160_d11.b1)MSMg01-160D11.TJ (MSMg01no160_d11.g1)
ACCAG359947AG359948
length721704
length of high quality
(start - end)
---283 (78 - 360)
definitionCHROMAT_FILE: MSMg01no160_d11.b1 PHD_FILE: MSMg01no160_d11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:26:06 2005CHROMAT_FILE: MSMg01no160_d11.g1 PHD_FILE: MSMg01no160_d11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:26:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTACGTTTCATTTTTTACACTATTTGATCTCTATCCTATTACT
ATAACCCACTTATTAGAAATTTTATATGTAAGTGTGATTTTTAAAATATC
TGCACTGACTTTAGACATTAATTTGCTAAATACTTATCTTGTATGCCATA
TAAATTTACTGATAAAAAGCAGAATCTCTATGGACTGTTCTACCTTTTGA
TGGATATTTCCTGCTAAATTCCTGGGATTTGTCAATACTTTGATACTTCT
GGTGACCTTTGTTTTTCTGGTTATTCCATGATTGCTAAAAATTATCCTCA
ATATCACGCCGATGAATAGTTCCCCCTGTCGTCCCCGCTAAGAGAATAAG
AACTAATTCATCTTGTATGACCCCAAAAAAACAAATACTGCCATTCGTGT
CTTAACTCCTGTTGTATGACAATTTGATGAATATGCGATCATTTTTGAAT
ATAACAGGGTTACTTATATTGTACATGATTTATATTGCCTTGTGGAGTGC
AATCATTTCGGGTTCTTCGAATAGATGCGCTGGATTGAGTTGCCCTGTGC
CGAACCCATTCTCCGTGCGCTTTTCCTGATATGTTCTCCTGTAACTACTC
CCATGACGCTTATTCATTGCCGTATTCATCCCCTACTTCTCTTTTATTCT
TTTTATACCACCCCCCTTTCT
TCGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTGTAGGCTTTGCAGGGAGAATCT
TCTCAGACACGGGTGCCTTCTGATTGGCCCAGCTCCAGCTAGTTCTGTGT
GGCTGCATCCTGATTCAAACTGATGGACAGAGATGGGCTTTCAGACTTGT
TTGATTACAGATGCCTTTGCTGCCAGGGGTGTTGTTTGGGGCTGCAGGGT
GGTGAGTCTTCTTGGCAAATCACATTTCTATCCTGGTACCCAATTAATAT
CCGAGGATTGGTTTGTTTATAATGAAAATCTCTGAGAATTTGGTATTACA
CCGAAAGCTTTCTTTTCCCTCCCCCCCCGCATTGGTCTGAACATGCCTGG
CTTTCCTACCCTCCACACCCCCACAACCTTATGTCTTCCTCTCTGATTGC
TTGTTTCTGTACTCCATCAGTGATTTGTACCCACCACCCCCATCGTATAG
CCTGCTACTCTCGATGTGAAATGTTAACTTACCATTGCTTCTTGTCTCTG
TGCGTATGTTCTCCAATAATGATTATAACTGTGTGTGTGTGTGTTGTGCG
TACTTTATATTTATTTATTTTTTTCCCACTTCGTTCCCTTCCAATCTTCT
CCCCGTTTTCCTTTTATTCCTTCCGCCCCTTTAACCCTCTTTTTCCCCTT
CTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no160_d11.g1 MSMg01no160_d11.g1 CHROMAT_FILE:
MSMg01no160_d11.g1 PHD_FILE: MSMg01no160_d11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:26:06 2005
         (283 letters)



>mm_chr12_27622477_27623159
          Length = 683

 Score =  543 bits (281), Expect = e-159
 Identities = 281/281 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtaggctttgcagggagaatcttctcagacacgggtgccttctgattggcccagctcca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 tgtaggctttgcagggagaatcttctcagacacgggtgccttctgattggcccagctcca 422

                                                                       
Query: 61  gctagttctgtgtggctgcatcctgattcaaactgatggacagagatgggctttcagact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gctagttctgtgtggctgcatcctgattcaaactgatggacagagatgggctttcagact 362

                                                                       
Query: 121 tgtttgattacagatgcctttgctgccaggggtgttgtttggggctgcagggtggtgagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tgtttgattacagatgcctttgctgccaggggtgttgtttggggctgcagggtggtgagt 302

                                                                       
Query: 181 cttcttggcaaatcacatttctatcctggtacccaattaatatccgaggattggtttgtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 cttcttggcaaatcacatttctatcctggtacccaattaatatccgaggattggtttgtt 242

                                                    
Query: 241 tataatgaaaatctctgagaatttggtattacaccgaaagc 281
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tataatgaaaatctctgagaatttggtattacaccgaaagc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space:   184676
Effective search space used:   184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)