BAC Information

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BAC

Clone NameMSMg01-161J01
Chromosome12 (Build37)
Map Location 93,758,156 - 93,758,504
singlet/doubletsinglet
Overlap genenone
Upstream geneTshr, Gtf2a1, Ston2, EG666955, LOC100039631, Sel1l, LOC100039367, EG432681, LOC667589, LOC100039387, LOC100039425, LOC628116
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-161J01.T7 (MSMg01no161_j01.b1)MSMg01-161J01.TJ (MSMg01no161_j01.g1)
ACCAG360936AG360937
length1,2151,227
length of high quality
(start - end)
349 (499 - 847)379 (503 - 881)
definitionCHROMAT_FILE: MSMg01no161_j01.b1 PHD_FILE: MSMg01no161_j01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:28:18 2005CHROMAT_FILE: MSMg01no161_j01.g1 PHD_FILE: MSMg01no161_j01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:28:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNTTTCTATGGGCCTATACATCCTAAGGGAGAGGATCCGCGGAATTCAGC
CCTAAATACAGTAGGTTATTGTTATGTGGCTGTGTGTTCAGCCATGCCAG
ACTTGTGGGAAATAATGGAAAGGCTTTGGTAACTATAAGAAAGAGAAAAT
GAATTATAAAATGTCAGAACCTGTCTACCTGGAGACAGTCTGGGTAAAGC
AGAATAGTCACATAAACCAATATTTACAAGGAACAATAATAAAGTATTTG
TGAGAATATATAAAAGAATGTGTAATGACAATGAAACTTCACCCGAGATG
AGCATAGTGATAATTTTAAGTATAAGGGGTCTTGTTTAGTTACCATCTCT
TCAACCAGAAAATACATAGCAATTTTCATTGTTTGAAATTTTGTATATTC
TTAAAATAATTTTAGTCATTTTCTCCCCCTCTTCCATTATCCTTTCTCAT
TTTTTTCCCCCCCCCCCCTGGAACCCTTCTTTCCCAAGAAAAATTTATAA
ACTCAGTTCTTTTTTAATGGTAAATTACAGTTTCTTACTCAAGACTTTGA
AATGTAAATAAAGGAAATATCTAATAAAAATAATTTTTAACTTCTCTCCA
GTAATACTTAATTTGTTTTTACCTTCCTTTGTTACAAACAACTTAAAAAT
TAGCTACTTCAGGCATGTTTCTTTGAATAATCTACCTGGCCATTTTTATG
CTTCTGAGCAAAGATAATCAAACAGAACTTTAAAACCAAACAAGTAAATT
TAAAAGCAGTAGAAAGGTAGTTTTAAAAATGACATAAATGTGGGATGGAA
ATTTCTTGTNGGGTTGAAAGAATTGAAGGAAGAGGATATTTCAATATCAG
GAAAATATAGTACTTACTTAAACATATATACCAAAATTTTAAAGAATAAA
AAAAAGTTGTAAATATCTGTAAAATAAATTAACAACGTCTTGCTTGTAAT
GGGAAAAAAAGACAGAAAGAAGACCTCTTATTTTATATAAAAAAGAACCC
TTATTTCCTCCCGGTTTTGCGGTGAAAAAAAGGAGGGATAATTGTTGTGC
CCCCCTCTCTCTCCCCCAAAAAATGTAGGGGGGTTAAAAGAAAAACCCCC
ATTTTCCTTCGGTGTTTATTCTCTTATCGGAAAAAAAAAAGGATAATATT
TCGGCCTCTAATGGCTGTATTGGTGGTGTTATCTTACTAATTTTCTTTTT
TTTCTCCACCTATTT
NNNTTTGAGAAGTGAGGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCCTCTCACCTGAGGAATACCAAATGGCTGAGA
AGCACCTGAACCTTATGTTCAGCATCCTTAATCATCAGGGAAATTCAAAT
CAAAACAACCCTGAGATTCCACCTCACACCAGTCACAATGGCTAAGATCA
AAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACA
CTCCTCCATTGTTGGTGGGATTGCAAGCTTGTAAAACCACTCTGGAAATC
AGTCTGGTGGTTCCTCTGAAAATTGAACATAGTACTATGTCCAACAGAGG
ATCCTGCAATACCTCTCCTGGGCATATATCCAGAAGATGTTCCAACTAGT
AAGAATGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGC
CAGAATTTTTTTCCCCCCCCCGATGCCCCTCAACAGAGGAATGAATACAG
AAAATGTGGTACATTTACACAATGGAGTACTACTCAGCTATTAAAAAGAC
TGAATTTATGAAATTTCTAGGCAAATGGATGGACCTGGAGGGCATCATCC
TGTGTGAAGTAACCCAGTCACAAAAGAACTCAAATGATATGTACTCACTG
TTAAGTGGATATTAGCCCAGAAACTTAGAATACCCAAGATACAAGATACA
ATTTGCAAAATACATGAAACTCAAGAAGAACGAAGACCAAAGTGTGGACA
CTTTGCCCCTTCTTAGAATTGGGAACAAAACACCCATGGAAGGAATTGCA
GAGACAAAGTTTGGAGCTGAGACGAAAGGATGGACCATCTAGAGACTGCC
ATACCCGGGGATCCATCCCATAATCAGCCTCCAAACGCTGACACCATTTC
AGCAAGATTTTGCTGAAAAGGACCCTGAAATAGCTGTCTCCTGTGAAGGC
TATGCAGGGGCCCTTGCAAACACAGAAATGGAATGTTCCCAGTCCGCCTA
TTTGGATGGAAAACAAGGGGCCCCCCCTGGGGGGAATTAAAAAAAAAAAC
CCCAAGGAAGTGAAAGGGGTCCGGCACTCCTATTGGTGGGGAAACACCAT
TTGTAATTAACCGGTTCTCTCCCCCAAACTTGGGGGCTGTTCCCTCCCAT
GTGATCCCAAAAAAGGCTCCAACTGCGCCCCCTATTTTAAAAAAAAGAAC
CCCTTGTTGCTTGGTTATACTTTATAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no161_j01.b1 MSMg01no161_j01.b1 CHROMAT_FILE:
MSMg01no161_j01.b1 PHD_FILE: MSMg01no161_j01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:28:18 2005
         (349 letters)



>mm_chr12_93757874_93758622
          Length = 749

 Score =  661 bits (342), Expect = 0.0
 Identities = 347/349 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaactcagttcttttttaatggtaaattacagtttcttactcaagactttgaaatgtaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 aaactcagttcttttttaatggtaaattacagtttcttactcaagactttgaaatgtaaa 572

                                                                       
Query: 61  taaaggaaatatctaataaaaataatttttaacttctctccagtaatacttaatttgttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 taaaggaaatatctaataaaaataatttttaacttctctccagtaatacttaatttgttt 512

                                                                       
Query: 121 ttaccttcctttgttacaaacaacttaaaaattagctacttcaggcatgtttctttgaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 ttaccttcctttgttacaaacaacttaaaaattagctacttcaggcatgtttctttgaat 452

                                                                       
Query: 181 aatctacctggccatttttatgcttctgagcaaagataatcaaacagaactttaaaacca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 aatctacctggccatttttatgcttctgagcaaagataatcaaacagaactttaaaacca 392

                                                                       
Query: 241 aacaagtaaatttaaaagcagtagaaaggtagttttaaaaatgacataaatgtgggatgg 300
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 aacaagcaaatttaaaagcagtagaaaggtagttttaaaaatgacataaatgtgggatgg 332

                                                            
Query: 301 aaatttcttgtngggttgaaagaattgaaggaagaggatatttcaatat 349
           ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 331 aaatttcttgtggggttgaaagaattgaaggaagaggatatttcaatat 283


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 349
Length of database: 749
Length adjustment: 9
Effective length of query: 340
Effective length of database: 740
Effective search space:   251600
Effective search space used:   251600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)