BAC Information

Click to search

BAC

Clone NameMSMg01-162C04
Chromosome12 (Build37)
Map Location 111,820,084 - 111,820,404
singlet/doubletsinglet
Overlap genePpp2r5c
Upstream geneRtl1, 6430411K18Rik, B830012L14Rik, LOC100040715, LOC100040724, LOC675987, LOC100041509, LOC100040746, 3110009F21Rik, Dio3as, Dio3, EG629595, EG668245, LOC100040799
Downstream gene9430024F10Rik, Dync1h1, 1700001K19Rik, Hsp90aa1, Wdr20a, Rage, 2810455K09Rik, LOC100041649, 2810452K22Rik, 4930573I19Rik, Ankrd9, 6030440G07Rik, Rcor1, 4930595D18Rik, Traf3, Amn, Cdc42bpb, A230065H16Rik, 1200009I06Rik, Tnfaip2, Gm266, Eif5, Mark3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-162C04.T7 (MSMg01no162_c04.b1)MSMg01-162C04.TJ (MSMg01no162_c04.g1)
ACCAG361352AG361353
length705705
length of high quality
(start - end)
294 (71 - 364)321 (370 - 690)
definitionCHROMAT_FILE: MSMg01no162_c04.b1 PHD_FILE: MSMg01no162_c04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:29:26 2005CHROMAT_FILE: MSMg01no162_c04.g1 PHD_FILE: MSMg01no162_c04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:29:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGGAAT
TCAATTCCCTTTCCCCACATGGTGGCTCACAACCATCTGTAATGGGATCT
GATGCCCTCTTCTGGTGTGCCTGAAGACAGCGACAGTGTACTCATATACA
TACAGACATACATACATCATATATAAATATTCTTTTGTTTGGTTGGTTGG
TTTTTCAAGACAGGGTTTCTCTGTGTAGCCCAGGTTGGCCTCGAACTCAG
AAATCCGCCTGCTTCTGCCTCCTGAGTGCTAGGATTAAAGGTGTGTACCA
CCATGCCCGGCTACATACATAAATATTCTTAAAAAATATTTATATTAGAG
TTTGTTTGTTTCTGTACAAACTGACCATTTTGCTTTGCCAGACATGGTAG
CATCCTCCTTGGATGCTGTCATTCCTACAGACTGAGAAAGGAGGATGGAG
GACCCAAAGCCAGCCAAGCATCACACCTGTGATAGCAGTGCTCGGGAGGT
GGGAGCCGAAGGATGGAGTCAGGAGTTCAAAACCATCCTCAGTCATGTGT
GATGGTTGCACATACTTGGCCCAGGGAGTGGCACTGTTAGGCGGGGTGGC
CCTGTTGGAGTAGGTGTGTCACTGTGAGTGTGAGCTTTAAGACCCTCATC
CTAGTTGGCTGGAAGCCAGTCTTCTGCTAGCAGCCTTCAGATGAAGATGT
AGAAC
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTGCATGGATTAAGCTTCTGTTTTAGATGG
GATAGCACGAGGAGATACCTCCTTAAACTTAGTGCTTTGTCTTCTTGTCC
TCTCAGGGTGGCCAGTATTTTGACTTATTTATCCTGCTCGAAAGCTGCTT
GAAATGTGTACTGCTCTCTGAACAGTGGCGAGTCTTCTCTTGTCTCCAGC
ATATATATAACTCAGTGTTACATGTCTTGATGCATAAGATAGGTTAAAAA
AAGAAGAAGAAGAAGAAAAATGGGGCTTCTTTTAAAACCTGATTTTAATC
GTGGTCTCGATGATCCGTGAAAAAGTTGTGAAATCAGACATTGCTCTCTC
GCGGCCTTGGAGGCGGGTCCCACGGGGAAGAAGGACATGTGCAGGGAGGG
AGAGCCAGCACGGCTAGTCAAAAAGGCGGCCCCAGCTGAGGGTGAACAGG
TTGGCCGCTTGGGTGAGAACACTTCCTGAGAAACTTGACAAGTACCTATC
CACTTTACCATTATGAAATCTATAATTAAAAAAAAAAAGTTGAGATGCCT
TCTCCTTTTGAGGGAAAAAGGGTGCTTTTATTGTATAAAGCAGTGTCTCT
GTGTTTTGATAGCCCACTGTTTGAACTCTCGTCTTTAGCTGGTAGAGTCT
CAGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no162_c04.g1 MSMg01no162_c04.g1 CHROMAT_FILE:
MSMg01no162_c04.g1 PHD_FILE: MSMg01no162_c04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:29:26 2005
         (321 letters)



>mm_chr12_111819884_111820604
          Length = 721

 Score =  605 bits (313), Expect = e-178
 Identities = 319/321 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaaagttgtgaaatcagacattgctctctcgcggccttggaggcgggtcccacggggaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaaaagttgtgaaatcagacattgctctctcgcggccttggaggcgggtcccacggggaa 260

                                                                       
Query: 61  gaaggacatgtgcagggagggagagccagcacggctagtcaaaaaggcggccccagctga 120
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaagggcatgtgcagggagggagagccagcacggctagtcaaaaaggcggccccagctga 320

                                                                       
Query: 121 gggtgaacaggttggccgcttgggtgagaacacttcctgagaaacttgacaagtacctat 180
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gggtgaacaggttggccacttgggtgagaacacttcctgagaaacttgacaagtacctat 380

                                                                       
Query: 181 ccactttaccattatgaaatctataattaaaaaaaaaaagttgagatgccttctcctttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccactttaccattatgaaatctataattaaaaaaaaaaagttgagatgccttctcctttt 440

                                                                       
Query: 241 gagggaaaaagggtgcttttattgtataaagcagtgtctctgtgttttgatagcccactg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gagggaaaaagggtgcttttattgtataaagcagtgtctctgtgttttgatagcccactg 500

                                
Query: 301 tttgaactctcgtctttagct 321
           |||||||||||||||||||||
Sbjct: 501 tttgaactctcgtctttagct 521


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space:   222144
Effective search space used:   222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)