BAC Information

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BAC

Clone NameMSMg01-163K10
Chromosome12 (Build37)
Map Location 7,078,276 - 7,078,585
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043137, LOC238049, LOC100042118
Downstream geneLOC668380, EG668388, Apob
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-163K10.T7 (MSMg01no163_k10.b1)MSMg01-163K10.TJ (MSMg01no163_k10.g1)
ACCAG362386AG362387
length723728
length of high quality
(start - end)
314 (46 - 359)288 (74 - 361)
definitionCHROMAT_FILE: MSMg01no163_k10.b1 PHD_FILE: MSMg01no163_k10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:31:17 2005CHROMAT_FILE: MSMg01no163_k10.g1 PHD_FILE: MSMg01no163_k10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:31:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTACTTATAGTCTCTTTATATTAGCTAGTGAAAATCAAATGCTGTT
CTTCCCTCATAGTAATGTTAATATTAGTTAACAGATGGAGACATAATAAC
CAGAGTGATTCGAGGCATTGAGTCCCTATTCTGGTAGCCATAGGTAAAGC
ATTGGAGCCTAAGTGTTGAAAATACAGGCATAGTTTTATATTGCACATTG
TGTGGTAGTCTTCTCTGTCAGGTAAAAAAAAATATCTATTTTAAAACTAT
AAATGGAAGAAAAATTAGTCATTTTGCTCTGGGTTTTCTAGACAAAGCTA
CCTCGTATGATTTTTTGTATACCCCCCCGCCCCACTGACAACATCAAAAC
AAAGTCAATAACTTTACCACCCATCATAACAAGACATTATTTATCTTTAG
GATTACATTCTTGTATAAATCTCTACAGATTAGAAGGGCAAATGTGACGC
AGACACACATATACACACACCTATAAATATCATGAAAACGGTGAAAATAC
ATTGTTTTCATTGCCTTGAAATCCCTCATGAATTTCCATGAGCCTTTGGG
GATTCTCCTTTGCACTTTGAGTTTATCATCTTGCAGTCTGACTTCATTGA
TGTTTGCAATGTTTTAATGCATATTGTTGCTTAAGGAGCCAAGTCTCTGC
TCTACAGGTCTTTCACAAGCTCG
CAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCAAAGAATTAAGCTCTAAGACAGGGAA
GGTATGTAGTAAGGTGAAAGTAAACAGAAAAAAGCAAAAGTTTCCTTCTT
CCATGTCCTTGTATATGCTTCCAGCAAAAGGCATGGCCCAAATTAAAGGG
GTGTTTCTTATTTCAAAAGGTCTAGATTAAAGGTATGTCTTCCTACTTCA
GAGATATAGACTAAAAGTTGTCCTCCTTCAAATTAAGCAAGTAAACAAAC
AAACAATCAAACAATCAAAAAATTTCCTCTGGGTACCCTATCCACTTTTG
GAGCTGTTGTTTTTTCATTTCGCCCGTCCAGCCCCAACCAAGAATAGCCA
TCACAGCATGTTACAAACACCACTGAAAAAGAAACTATAAATGTGAAAGA
GAGAAAAGAGGTGCATATAAGACAGTATAAGGGGAGGAAAAAGAAGAGTG
AAACAATAGAATTATACCATAATTTCAAAAAGTTAAGTAAATAACAAAAA
TGTTTAGAGACCTATAAAATGCAAGGAAATTCTATGTTGACTCCAAAAGT
ATACCATGGCAGAACATGTTATTGTTTCTTTGAGAGAGGAAAATTAAGAG
TTCTGCACAAGTCACCATTTCCTAGAGATTTTGAAGTGTCACAGACCTTG
GAATCTTCTTTGGAAATGCCCCATTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no163_k10.b1 MSMg01no163_k10.b1 CHROMAT_FILE:
MSMg01no163_k10.b1 PHD_FILE: MSMg01no163_k10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:31:17 2005
         (314 letters)



>mm_chr12_7078072_7078785
          Length = 714

 Score =  584 bits (302), Expect = e-171
 Identities = 308/310 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctacttatagtctctttatattagctagtgaaaatcaaatgctgttcttccctca 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 gaattctacttatagtctctttatattagctagtgaaaatcaaatgctgttcttccctca 455

                                                                       
Query: 65  tagtaatgttaatattagttaacagatggagacataataaccagagtgattcgaggcatt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 tagtaatgttaatattagttaacagatggagacataataaccagagtgattcgaggcatt 395

                                                                       
Query: 125 gagtccctattctggtagccataggtaaagcattggagcctaagtgttgaaaatacaggc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 394 gagtccctattctggtagccataggtaaagcattggagcctaagtgttgaaaatataggc 335

                                                                       
Query: 185 atagttttatattgcacattgtgtggtagtcttctctgtcaggtaaaaaaaaatatctat 244
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 atagttttatattgcaaattgtgtggtagtcttctctgtcaggtaaaaaaaaatatctat 275

                                                                       
Query: 245 tttaaaactataaatggaagaaaaattagtcattttgctctgggttttctagacaaagct 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 tttaaaactataaatggaagaaaaattagtcattttgctctgggttttctagacaaagct 215

                     
Query: 305 acctcgtatg 314
           ||||||||||
Sbjct: 214 acctcgtatg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space:   215025
Effective search space used:   215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)