BAC Information

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BAC

Clone NameMSMg01-164A19
Chromosome12 (Build37)
Map Location 5,311,726 - 5,311,877
singlet/doubletsinglet
Overlap geneKlhl29
Upstream geneNcoa1, LOC100041995, LOC100042005, LOC100042014, Itsn2, 4930417G10Rik, A830093I24Rik, Pfn4, EG626534, 0610009D07Rik, Fkbp1b, BC068281, Gm1964, Ubxd4, Atad2b, LOC668332
Downstream gene2810032G03Rik, LOC435292, LOC100042095, LOC672098, LOC100043137, LOC238049
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-164A19.T7 (MSMg01no164_a19.b1)MSMg01-164A19.TJ (MSMg01no164_a19.g1)
ACCAG362656AG362657
length729767
length of high quality
(start - end)
234 (134 - 367)152 (79 - 230)
definitionCHROMAT_FILE: MSMg01no164_a19.b1 PHD_FILE: MSMg01no164_a19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:31:47 2005CHROMAT_FILE: MSMg01no164_a19.g1 PHD_FILE: MSMg01no164_a19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:31:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NATATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTCAACTGAGCAATACTAAATGGCTGAGAAGCACCTGAAAA
AATGTTCAGCATCCTTAATCATCAGCCCAAATGCAAATCAAAACAACCTT
GAGATTCTACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTG
ACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGAAACACTCCTCCACTGC
TGGAGGGATTGCAAGCTTGTACAACTACTCTGGAAGTCAGTCTGGAGGTT
CCTCAGAAAATTGGACATAATACTACCAGAAGATCCAGCAGTACCTCTCC
TGGGCATTTACTCATATTTATGTTCCCACTGGCCCTAAGAACACATGCTC
CACTATGTTCAGAGCAGCCTTACCTATAATAGCCAGAAGCTGGAAAGAAC
CTAGATGTCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTAC
ACAATGGAGTACTACTCAGCTATTAAAAACAATGTATTTATGAAATTCTT
AGACAAATGGATGTATCTGGAGTATATCATCCTTAGTGAGGTAACCCAAT
CACAAAAGATGTCATTAAATATGCACTCACTGATAAATGGATATTAGCCC
AGAAACATAAAACACCCAAGATACTATTTTCAAACACCAGAAAATCATGA
AGAGAGAAGACCAATGCGTGCATACTTCA
TCCGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTACATATGTCTATGTCTATATA
CATGGTCATCTTTCTGCCATCCCTTATTATCCCTCAAAAAAGTAGGATGC
CTTGTATTTAATATAGACAATTATATCAATTAACAATGTATAAAAGTAAA
AAGGACTCAGTAATTAATTTATTTGACATGGCCATGGTAATTAGCCTTGG
GATTATGACCTCACCATTTTGGTAGAGCTATAAACATTTTTTCTTATTTC
TTTCTTTATTAATTATATTGTGCCAGGTTATACAAGGTCATTTTCATGCA
AGTATATAATTTATTTTTTCTCCCCCCCCTCTCGAAATTTATTTTACTTT
CACTTGTGTGTGTGTGAGCGCCCGCGAAAGAAAAAGTGTGTGTATGTGAT
CATCTTTATCTCTGAATCGATGCATTTAAATATGTTTTTGTTGATACCTC
TATATTTTTACGCCATCGACACGACAAAAATGATTCTTTATACTTTCTCT
TTGTCACCCTTTTATTCATAATCTAGCTCCACTACCCTTTATTTGTTATA
TTTTTCTTAAATTCATCTCCTATTATGTTATTTCGATTTTTCAAATATTA
TTACTTTTTTATTTACTTGATATCTTCTTATCTTTTTCATTTTTATTATC
GATTATTAAGATTTTTCTTCCCCTCTCCCATTTGTTCTTCCATTATATTC
TCTCCTATATATATGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no164_a19.g1 MSMg01no164_a19.g1 CHROMAT_FILE:
MSMg01no164_a19.g1 PHD_FILE: MSMg01no164_a19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:31:47 2005
         (152 letters)



>mm_chr12_5311526_5312077
          Length = 552

 Score =  286 bits (148), Expect = 3e-82
 Identities = 151/152 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tacatatgtctatgtctatatacatggtcatctttctgccatcccttattatccctcaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tacatatgtctatgtctatatacatggtcatctttctgccatcccttattatccctcaaa 260

                                                                       
Query: 61  aaagtaggatgccttgtatttaatatagacaattatatcaattaacaatgtataaaagta 120
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaagtatgatgccttgtatttaatatagacaattatatcaattaacaatgtataaaagta 320

                                           
Query: 121 aaaaggactcagtaattaatttatttgacatg 152
           ||||||||||||||||||||||||||||||||
Sbjct: 321 aaaaggactcagtaattaatttatttgacatg 352


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 152
Length of database: 552
Length adjustment: 8
Effective length of query: 144
Effective length of database: 544
Effective search space:    78336
Effective search space used:    78336
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)