BAC Information

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BAC

Clone NameMSMg01-164E11
Chromosome12 (Build37)
Map Location 34,768,909 - 34,769,219
singlet/doubletsinglet
Overlap genenone
Upstream gene1110049B09Rik, Atxn7l4, Atxn7l1, 4930504H06Rik, Twistnb, LOC668801, LOC668806, Ferd3l, Twist1
Downstream geneHdac9, 4921508M14Rik, Prps1l1, Snx13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-164E11.T7 (MSMg01no164_e11.b1)MSMg01-164E11.TJ (MSMg01no164_e11.g1)
ACCAG362807AG362808
length752730
length of high quality
(start - end)
319 (41 - 359)278 (76 - 353)
definitionCHROMAT_FILE: MSMg01no164_e11.b1 PHD_FILE: MSMg01no164_e11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:32:05 2005CHROMAT_FILE: MSMg01no164_e11.g1 PHD_FILE: MSMg01no164_e11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:32:05 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CAGATCAGTGGTTGGAGTGACAAAGCAGGTGGCCTTGCGCACAAATGCAG
GGAGAGGAGGGTTCAGGCCGATCATAGTATTAAGTCAGAAGTTCTCTGAA
AATCTTTCCACAATTGTCTGTATACAGTCATCTCATCCATCATGCTAAAT
TCATGGTAACCATTAACTTATTCTATACTCTACAGTTTCAGCTTTCCCAG
AGGAAAAAAATAATTGAAATAGTAAGATGTGTGTCCTTTTGCATCTGATT
TTATTTTCTTATTTATTTACTGTTGAATCCATTCAAACACCATACTTCTT
CCTGATTGTATCACTACCCTGCCCATTTTATTGTTGAGTAGCATCTATTG
TCCAAATAAAACACAGTTTACTTATCCATTGTCCTACTGTGAAATATCAG
GGTCACTTCTAGTTCAGGCAACTCTATATAAAAAGGTCTATGACTATTCG
CATGCAGATTTTAGTGTAAGTTCAAGTTTTAATTTCTCTAGAGTAAATAC
CTGGAAAGAGGATTTATCAATCTTATGGAAACTTTATTATAAACTCCTTT
TAAAACCACTGCACAATTCCCAGTACTTGTGCCTTTCTGCATTCCCATTA
TAAAATAATTTCCAAGTGTTATCCTTTCCCATTAATTGGTATCGTATCTT
TTGGGCTATTCACATAAAAATATGTGCACTGTTGAAAATTTCACCATTCG
TG
CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAAAGCAGAGTCTCAAAGAGATGTTT
GGTTAGCTATGTTCAGTTCAAACAGCTTCATTCACAATAGCTGAAAGTTG
CAAGAGACTTAAACATCCATCAATGGATAAACAAAATTCAATCTAAATTT
ATTGTGGATGATCGCTCTACCTTAAAAAGAAAAGAAGTGTTGGTGTATAG
CACAGCGTAAATTGCCCTTGGGGACATTGTGCTAAGTGAAATATACCAGT
AACAGAGAAGACCAAACTCAGCTTGATCTCACTTACAGGAGGTACCTGTG
AGTGGATACTTATTTATTGCTCCCCCCCCCCCACATCAGTTAAATCCAGA
AACAAGACTTGGGGCAAGGAACATAACTCCATTTGGAAACTTGGGTTGAA
AAATAACATGGAAGATTCGTATATAGCGAGTGTCTTTGTGGAAGGCTGAT
TTAGTTATGATTTACATAGGAGATAAAGATTATTTATTTCACATGTATGA
TTTGTTGATTTTAAGGCATGTATTATAAACTCCAAAGCAAGCTTACAAAA
AAAGAGCCAGGTGTTTCTTACTCGCAGGTGCCCAAGACAGAATGTTGCAC
ATCCAATACCAAAAATCCAGTCACCAAATACTTCTAGCCTGAAGTTCTTA
AGTATAAAGACCACTGTTCCTTTCAACCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no164_e11.b1 MSMg01no164_e11.b1 CHROMAT_FILE:
MSMg01no164_e11.b1 PHD_FILE: MSMg01no164_e11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:32:05 2005
         (319 letters)



>mm_chr12_34768705_34769423
          Length = 719

 Score =  495 bits (256), Expect = e-144
 Identities = 298/314 (94%), Gaps = 6/314 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccagatcagtggttggagtgacaaagcaggtggccttgcgcacaaatgcaggga- 63
           ||||||||| |||||||||||||||| ||||||||||||||||| |||||||||||||| 
Sbjct: 515 gaattccaggtcagtggttggagtgataaagcaggtggccttgcacacaaatgcagggag 456

                                                                       
Query: 64  --gaggagggttcaggccgatcatagtattaagtcagaagttctctgaaaatctttccac 121
             |||| |||  ||||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 gggagggggg--cagggggatcatagtattaagtcagaagttctctgaaaatctttccac 398

                                                                       
Query: 122 aattgtctgtatacagtcatctcatccatcatgctaaattcatggtaaccattaacttat 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 aattgtctgtatacagtcatctcatccatcatgctaaattcatggtaaccattaacttat 338

                                                                       
Query: 182 tctatactctacagtttcagctttcccagaggaaaaaaataattgaaatagtaagatgtg 241
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||  ||
Sbjct: 337 tctatactctacagtttcagctttcccagag-aaaaaaataattgaaatagtaagacatg 279

                                                                       
Query: 242 tgtccttttgcatctgattttattttcttatttatttactgttgaatccattcaaacacc 301
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 278 tgtccttttgcatctgattttattttcttatttatttactgttgagtccattcaaacacc 219

                         
Query: 302 atacttcttcctga 315
           || |||||||||||
Sbjct: 218 atgcttcttcctga 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)