Query= MSMg01no165_k19.b1 MSMg01no165_k19.b1 CHROMAT_FILE:
MSMg01no165_k19.b1 PHD_FILE: MSMg01no165_k19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:33:55 2005
(529 letters)
>mm_chr12_61421458_61422386
Length = 929
Score = 735 bits (380), Expect = 0.0
Identities = 403/418 (96%), Gaps = 14/418 (3%)
Strand = Plus / Minus
Query: 3 ggaattctattaaaattattcacaaatccagcacaatatttatgctccataaaatattaa 62
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 408 ggaattctattaaaattatttacaaatccagcacaatatttatgctccataaaatattaa 349
Query: 63 ataggaaaattgggatagaaaatcagtttcttctcattgtaaaaataagctgctctactg 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 ataggaaaattgggatagaaaatcagtttcttctcattgtaaaaataagctgctctactg 289
Query: 123 tctctcaatatgaagtattctgtgtgatatatacacatgcacatatactcagacaattac 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 tctctcaatatgaagtattctgtgtgatatatacacatgcacatatactcagacaattac 229
Query: 183 tttgtctactaagtttaattttttcctatattttaaaaaaaattactattaattactatt 242
||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct: 228 tttgtctactaagtttaattttttcctatattt-aaaaaaaa---------attactatt 179
Query: 243 aatacaagctgaattttgcaaaatacattctctacaactaatgatatgttttttggtgtt 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 aatacaagctgaattttgcaaaatacattctctacaactaatgatatgttttttggtgtt 119
Query: 303 tgtttgtttgtttgtttgtttgttt----ttggatgacttacaggacagagcaaatttta 358
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 118 tgtttgtttgtttgtttgtttgtttgtttttggatgacttacaggacagagcaaatttta 59
Query: 359 taaaacatctttgtaaaatcactgtgaacagaggcattgttagaatatgatccaacct 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58 taaaacatctttgtaaaatcactgtgaacagaggcattgttagaatatgatccaacct 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 529
Length of database: 929
Length adjustment: 10
Effective length of query: 519
Effective length of database: 919
Effective search space: 476961
Effective search space used: 476961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no165_k19.g1 MSMg01no165_k19.g1 CHROMAT_FILE:
MSMg01no165_k19.g1 PHD_FILE: MSMg01no165_k19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:33:55 2005
(653 letters)
>mm_chr12_61232363_61233415
Length = 1053
Score = 1232 bits (637), Expect = 0.0
Identities = 649/653 (99%)
Strand = Plus / Plus
Query: 1 ttgcacctcacagactaatttccaatctgggggaagaactgattttcctaataagaataa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgcacctcacagactaatttccaatctgggggaagaactgattttcctaataagaataa 260
Query: 61 gaatagtctaatttatattgaagtatcattgatacagtaagtcttcagacttcttagggt 120
||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 261 gaatagtctcatttatattgaagtatcattgagacagtaagtcttcagacttcttagggt 320
Query: 121 atcgacttaaatcccatttgaggattatattgaagatatgactaggcccaacaagttggt 180
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atctacttaaatcccatttgaggattatattgaagatatgactaggcccaacaagttggt 380
Query: 181 tagaaactagaggttgacttaacatgaaaatcagattttgtagaatcattgtctttcatt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tagaaactagaggttgacttaacatgaaaatcagattttgtagaatcattgtctttcatt 440
Query: 241 tcattcttttttattagatcttttctttatttacatttcaaattttatcccctttcctca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcattcttttttattagatcttttctttatttacatttcaaattttatcccctttcctca 500
Query: 301 tttcccttcccaatgcccccctcccatcccatccccctttcctttgtcactaacctacca 360
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 501 tttcccttcccaatgcccccctcccatcccatccccctttcccttgtcactaacctacca 560
Query: 361 actcctgcttccctgttctggcattattttgcactggggcactgagccttcacaagacaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 actcctgcttccctgttctggcattattttgcactggggcactgagccttcacaagacaa 620
Query: 421 agggcctctcctctcactgatgtcccacaaggccatcctctgctacatattcagctggag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agggcctctcctctcactgatgtcccacaaggccatcctctgctacatattcagctggag 680
Query: 481 ccatgggttcctccatgtgtattctaaggctggtggtttagtctctgggagatctggggg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ccatgggttcctccatgtgtattctaaggctggtggtttagtctctgggagatctggggg 740
Query: 541 tactggttagttcgtattattgttcctcctatggggctacaaagtccttcagctccttgg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tactggttagttcgtattattgttcctcctatggggctacaaagtccttcagctccttgg 800
Query: 601 gtcctttctctagttccttcattgtgtgccttgtgctcagtcccatggatggc 653
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 gtcctttctctagttccttcattgtgtgccttgtgctcagtcccatggatggc 853
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1053
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1043
Effective search space: 670649
Effective search space used: 670649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
