BAC Information

Click to search

BAC

Clone NameMSMg01-165M15
Chromosome12 (Build37)
Map Location 98,488,106 - 98,643,635
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039664, EG628277
Downstream geneLOC382626, LOC100039743, LOC667732, LOC628351, LOC100039770, LOC667746, Galc, Gpr65
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-165M15.T7 (MSMg01no165_m15.b1)MSMg01-165M15.TJ (MSMg01no165_m15.g1)
ACCAG363825AG363826
length758750
length of high quality
(start - end)		281 (35 - 315)681 (66 - 746)
definitionCHROMAT_FILE: MSMg01no165_m15.b1 PHD_FILE: MSMg01no165_m15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:34:05 2005CHROMAT_FILE: MSMg01no165_m15.g1 PHD_FILE: MSMg01no165_m15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:34:05 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(98,643,360 - 98,643,635)(98,488,106 - 98,488,786)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXTCCGAGAATCCGCGGAATTCTGCTT
CTACTGCCATAGGTTCAAAGGCATGGTAGTAACTGAAGATGACACATATT
TTACTGGAAAATTAAAACACATGCCCATGGCTGAAGATTTGAGATGCTAA
TGAGGCTCAGACTTGTATATAGAACTATAAGTAATACAGTGGTTTGAATG
AAAATTGCCTGTGTAGGCTCGTGTATTTGAATGCTTAAGTCCTCAGTTGA
TGGAACTCTTTGGAAATGGTTAGGAGATGTGGTTTTGGTGGGGATGATGC
ATCACTTGGGGGAAGGTTTAGAGTTTCAAAAGACTTAAGTTGTTCCTAGT
TAGCTTTCCCTCATTCCGCCTGATGTGGATATGTTGATGAGATGGAAGCT
CTCAGCTCCCCCCACTCTAACATCTTTACCTGTCTGATGCCCTTTTCCCT
GCTACACTGGTCATGGACTCTATAATCCTCTGAAACCTTGAGCTCCTATA
ACCTGCTTTCTCTTATAAGTCGTCCTATCCCCGATTGCCTTGCCCCTACA
TTGTTTAAATACGACGCTACCCTATTACCCACGTTCACCACCGTATTTTA
TCCGCTCCACTCTAATTACTACTTTCTCCCACCTCTTATTCTCCCTTCCT
CTACCCTCACTTGTCGTTGTCCCTTATTTTTGAATTAATTTTTCCTCCTG
TCCTCTCTTCTGACCCTCTCTCCCTCTTTCTAATTCCGTTTTCGATCTTC
TTTCTTGG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCTCTTGTAAGCCTTTCATGGATTTTAATGTTTATT
ATGCTTACAGTATTTCAGATCAGAGTTATATAAACAGAGACCATACTTTG
AGCTGCTGGTAAGCCAGACTCAGGATGTTAATTAGTTTTTAATAATCAGT
TTTGAAACCTATACATTACAAATCACAAAAGATCAAAGCATAGGAATTAG
TACCTAGTTATCTGGCCAGATGCTACACACATATGAATTAGGAACCGTGA
AAATTGCACCAAAAGATATAGAATGTTTTGTACTTTGAAATCTTAAAATC
TATTATGAACAGCTAATTAAAAATAAAAGAAAAAATATTTCATTGTATTC
ATGATTGATCATTTTCCACATCTTTTTTGTATTTTTTTATGTATAATGCC
ACTATAGCGACAGTTTTAGATAGCAGTGGGAATAGAATCTTGATTCTTTA
AACAAAATATAATGTGGGATAACATTATGTTAACATGTGGATTTTCAGCA
TGTCCCTTGCAAATCTATCCTTTGTTCATGATCAGAAACGCATGTAACTG
CTTTAATAAGCACCTGGAGACCATCACTTTGTGGAGGACACAAACAAACA
AACAAAACACAATATCTCTGGTTATTCACACTTTCACCAAAAACTCAGAG
TAATGGGAACAGCATTCAAACTTCATTCTTTGAAATCAAAATGCATGTGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no165_m15.b1 MSMg01no165_m15.b1 CHROMAT_FILE:
MSMg01no165_m15.b1 PHD_FILE: MSMg01no165_m15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:34:05 2005
         (281 letters)



>mm_chr12_98643282_98643962
          Length = 681

 Score =  480 bits (248), Expect = e-140
 Identities = 269/276 (97%)
 Strand = Plus / Minus

                                                                       
Query: 6   gaattctgcttctactgccataggttcaaaggcatggtagtaactgaagatgacacatat 65
           |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 gaattctgcttctactggtataggttcaaaggcatggtagtaactgaagatgacacatat 295

                                                                       
Query: 66  tttactggaaaattaaaacacatgcccatggctgaagatttgagatgctaatgaggctca 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 294 tttactggaaaattaaaacacatgcccatggctgaagatttgagatgctaatgagactca 235

                                                                       
Query: 126 gacttgtatatagaactataagtaatacagtggtttgaatgaaaattgcctgtgtaggct 185
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 234 gacttgtatatagaactataagtaatacagtggtttgaatgagaattgcctgtgtaggct 175

                                                                       
Query: 186 cgtgtatttgaatgcttaagtcctcagttgatggaactctttggaaatggttaggagatg 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 174 cgtgtatttgaatgcttaagtcctcagttgatggaactctttggaaatggttaggagatg 115

                                               
Query: 246 tggttttggtggggatgatgcatcacttgggggaag 281
           |||||||| ||||||||||| |||||| ||||||||
Sbjct: 114 tggttttgctggggatgatgtatcactggggggaag 79


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 681
Length adjustment: 9
Effective length of query: 272
Effective length of database: 672
Effective search space:   182784
Effective search space used:   182784
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no165_m15.g1 MSMg01no165_m15.g1 CHROMAT_FILE:
MSMg01no165_m15.g1 PHD_FILE: MSMg01no165_m15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:34:05 2005
         (681 letters)



>mm_chr12_98487906_98488986
          Length = 1081

 Score = 1278 bits (661), Expect = 0.0
 Identities = 676/681 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctcttgtaagcctttcatggattttaatgtttattatgcttacagtatttcagatcagag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctcttgtaagcctttcatggattttaatgtttattatgcttacagtatttcagatcagag 260

                                                                       
Query: 61  ttatataaacagagaccatactttgagctgctggtaagccagactcaggatgttaattag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttatataaacagagaccatactttgagctgctggtaagccagactcaggatgttaattag 320

                                                                       
Query: 121 tttttaataatcagttttgaaacctatacattacaaatcacaaaagatcaaagcatagga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttttaataatcagttttgaaacctatacattacaaatcacaaaagatcaaagcatagga 380

                                                                       
Query: 181 attagtacctagttatctggccagatgctacacacatatgaattaggaaccgtgaaaatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attagtacctagttatctggccagatgctacacacatatgaattaggaaccgtgaaaatt 440

                                                                       
Query: 241 gcaccaaaagatatagaatgttttgtactttgaaatcttaaaatctattatgaacagcta 300
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcaccaaaagatataggatgttttgtactttgaaatcttaaaatctattatgaacagcta 500

                                                                       
Query: 301 attaaaaataaaagaaaaaatatttcattgtattcatgattgatcattttccacatcttt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 attaaaaataaaagaaaaaatatttcattgtattcatgattgatcattttccacatcttt 560

                                                                       
Query: 361 tttgtatttttttatgtataatgccactatagcgacagttttagatagcagtgggaatag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tttgtatttttttatgtataatgccactatagcgacagttttagatagcagtgggaatag 620

                                                                       
Query: 421 aatcttgattctttaaacaaaatataatgtgggataacattatgttaacatgtggatttt 480
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 621 aatcttgattctttaaacaaaatataatgtgggataacattatgctaacatgtggatttt 680

                                                                       
Query: 481 cagcatgtcccttgcaaatctatcctttgttcatgatcagaaacgcatgtaactgcttta 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cagcatgtcccttgcaaatctatcctttgttcatgatcagaaacgcatgtaactgcttta 740

                                                                       
Query: 541 ataagcacctggagaccatcactttgtggaggacacaaacaaacaaacaaaacacaatat 600
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 741 ataagcacctggagaccatcactttgtggaggaaacaaacaaacaaacaaaacacaatat 800

                                                                       
Query: 601 ctctggttattcacactttcaccaaaaactcagagtaatgggaacagcattcaaacttca 660
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 801 ctctggttattcacactttcaccaaaaactcagagtaatgggaacagcattcaaacatca 860

                                
Query: 661 ttctttgaaatcaaaatgcat 681
           ||||||| |||||||||||||
Sbjct: 861 ttctttgcaatcaaaatgcat 881


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 681
Length of database: 1081
Length adjustment: 10
Effective length of query: 671
Effective length of database: 1071
Effective search space:   718641
Effective search space used:   718641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |