BAC Information

Click to search

BAC

Clone NameMSMg01-166J22
Chromosome12 (Build37)
Map Location 118,248,717 - 118,404,786
singlet/doubletdoublet
Overlap genePtprn2
Upstream geneZfp386, Vipr2, LOC676058, Wdr60, LOC100042963, D12Ertd551e, D430020J02Rik, Ncapg2, Rnu7-ps1, LOC627375
Downstream geneLOC432713, LOC100042461, Rapgef5, A930023M06Rik, Cdca7l, Dnahc11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-166J22.T7 (MSMg01no166_j22.b1)MSMg01-166J22.TJ (MSMg01no166_j22.g1)
ACCAG364390AG364391
length746766
length of high quality
(start - end)		385 (37 - 421)296 (77 - 372)
definitionCHROMAT_FILE: MSMg01no166_j22.b1 PHD_FILE: MSMg01no166_j22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:35:10 2005CHROMAT_FILE: MSMg01no166_j22.g1 PHD_FILE: MSMg01no166_j22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:35:10 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(118,248,717 - 118,249,086)(118,404,495 - 118,404,786)
sequence
NCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGAATCCGC
GGAATTCAAGTTTTCATACCAAAGGACAATCTGGGGTGCTAGAAATAAAT
GTAGGTATAATAAAAATCACAATGTGTGGGTGAAGGAAGACTGCAATTAA
AATGGGTTTTCTGTGCTGAGAGATGAGGACCTTGGATCACCAGTCCCCAC
TGGCGTGGTAACATATATCTGTAAGCCCAGAACTAAGGAGGCAGAGATAG
GAGCTCCCTAGAACACCCTGGCCAGCTAACATACACAAGTCACCAATCTT
TAGGTCCAGTGAGAGAACCTATCTTAAAAACTCATGTGGGAAGGAATAGA
GGAAGATTCCTAATGTCACTCTCTGACCTCCTTACACATGTGCACAAGGT
GTACACACACATAGACAGACACACCCACACATGGGCTTGTAGTGCTAAAT
CAGTGTAAGAAAAGGGTGCTCTGGCAGTCCTGTGTAGAGAAGTGCTGTTC
TGAGGCAAGTATCATATAGCAGCATGGCATGATTCAAGTATAGATAGTCA
AGTAACCTGACTCACTTTATGTGCAGTCCTATGACAGTACAGCCCGAAAT
ACTGTATAGTAAAGACCTGTGACCCTGTGTCCTGCTATCTGCCCGTTGTA
CACCCCCTTATACTGTTTTTTTTCACTCACTTTATATCCCAATGACTTTA
CTACCCATTGTTCCCCCCCCTTTTTAATTCCGCCCTTTTTCCTCCN

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAAGGGACTAGGAGAGAAGAGGGG
AGAATGCCATCTAATCATCTAACTACTTATTTTTGGCATAGTTTTTACCC
AATCACCTCCCACGGAACTGGGACACCTGTGTGAGTAAGAGGCAAGACGT
AGCCAGGGACTGACCATCATGATTCTGTGCCTTTCAATGAGTGGATACAC
AGACCTACATGCTCGTACAGGCATGTAAGCATGTGTACGTGCACATACGT
AGCATAGGAAGGCAATTATGAAAAAAAAAGGTAAACAAAGTTGTTTTGTT
TTTGGGTTATGTGGGGGGTGCCCCCCCCCCCCTCCCTTTTTTTTTCTTCC
TTTTTTTCACATAGGGGGCCCCCCCCCCTTTCTTTCTGTTTCTGCTTCTC
TTCTGCCGTTGTTTCTTTTTCCAGACCCGTCTTTTCCGTATCTTTTTGTA
TGCACGCGTCTGTATGTATCCTTGTTTGTTGTTCGCGCTCTCTGTGTTTT
CTCTGTCCTTGTTCCTTGTTTTGGCGCCTTTGCGAGTTTTGTCCGTCGTT
TAGTTCTCCGTGCCTCTCTTACTTGTACCCTCCCGCTTTGTGTCTCCCTC
TGTTTCCGCTGTCCGCCTCCTGTTTGTTTTTCGCTTTTTTTTGCGTCGCT
GAGATTTTTATCACGGGCTAGGTCGTTTCCTGTCTGCTCTCTTCGTTTTT
TTGCTGTTCTCCTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no166_j22.b1 MSMg01no166_j22.b1 CHROMAT_FILE:
MSMg01no166_j22.b1 PHD_FILE: MSMg01no166_j22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:35:10 2005
         (385 letters)



>mm_chr12_118248502_118249286
          Length = 785

 Score =  692 bits (358), Expect = 0.0
 Identities = 367/370 (99%)
 Strand = Plus / Plus

                                                                       
Query: 16  gaattcaagttttcataccaaaggacaatctggggtgctagaaataaatgtaggtataat 75
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 gaattcaagttttcatacgaaaggacaatctggggtgctagaaataaatgtaggtataat 275

                                                                       
Query: 76  aaaaatcacaatgtgtgggtgaaggaagactgcaattaaaatgggttttctgtgctgaga 135
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 aaaaatcacaatgtgtgggtgaaggaagactgcaattaaaatgggttttctgtgctgaga 335

                                                                       
Query: 136 gatgaggaccttggatcaccagtccccactggcgtggtaacatatatctgtaagcccaga 195
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 gatgaggaccttggatcaccagtccccactggcgtggtaacatatatctgtaagcccaga 395

                                                                       
Query: 196 actaaggaggcagagataggagctccctagaacaccctggccagctaacatacacaagtc 255
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 396 actaaggaggcagagataggagctccctagaacaccctagccagctaacatacacaagtc 455

                                                                       
Query: 256 accaatctttaggtccagtgagagaacctatcttaaaaactcatgtgggaaggaatagag 315
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 accaatcttcaggtccagtgagagaacctatcttaaaaactcatgtgggaaggaatagag 515

                                                                       
Query: 316 gaagattcctaatgtcactctctgacctccttacacatgtgcacaaggtgtacacacaca 375
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 gaagattcctaatgtcactctctgacctccttacacatgtgcacaaggtgtacacacaca 575

                     
Query: 376 tagacagaca 385
           ||||||||||
Sbjct: 576 tagacagaca 585


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 385
Length of database: 785
Length adjustment: 9
Effective length of query: 376
Effective length of database: 776
Effective search space:   291776
Effective search space used:   291776
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no166_j22.g1 MSMg01no166_j22.g1 CHROMAT_FILE:
MSMg01no166_j22.g1 PHD_FILE: MSMg01no166_j22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:35:10 2005
         (296 letters)



>mm_chr12_118404295_118404990
          Length = 696

 Score =  534 bits (276), Expect = e-156
 Identities = 288/292 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaagggactaggagagaagaggggagaatgccatctaatcatctaactacttatttttgg 60
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 492 aaagggactaggagagaagaggggagaatgccttctaatcatctaactacttatttttgg 433

                                                                       
Query: 61  catagtttttacccaatcacctcccacggaactgggacacctgtgtgagtaagaggcaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 catagtttttacccaatcacctcccacggaactgggacacctgtgtgagtaagaggcaag 373

                                                                       
Query: 121 acgtagccagggactgaccatcatgattctgtgcctttcaatgagtggatacacagacct 180
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 372 acgtagccagggactgaccatcatgattctgtgcctttcaatgagtggattcacagacct 313

                                                                       
Query: 181 acatgctcgtacaggcatgtaagcatgtgtacgtgcacatacgtagcataggaaggcaat 240
           ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 acatgctcgcataggcatgtaagcatgtgtacgtgcacatacgtagcataggaaggcaat 253

                                                               
Query: 241 tatgaaaaaaaaaggtaaacaaagttgttttgtttttgggttatgtgggggg 292
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 tatgaaaaaaaaaggtaaacaaagttgttttgtttttgggttatgtgggggg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 296
Length of database: 696
Length adjustment: 9
Effective length of query: 287
Effective length of database: 687
Effective search space:   197169
Effective search space used:   197169
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


| Home | SequenceCutter | Blast | Download |