BAC Information

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BAC

Clone NameMSMg01-168H09
Chromosome12 (Build37)
Map Location 34,233,143 - 34,233,446
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043548, Pbef1, LOC100043553, 4933406C10Rik, Sypl, LOC100043109, 1110049B09Rik, Atxn7l4, Atxn7l1, 4930504H06Rik, Twistnb, LOC668801
Downstream geneLOC668806, Ferd3l, Twist1, Hdac9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-168H09.T7 (MSMg01no168_h09.b1)MSMg01-168H09.TJ (MSMg01no168_h09.g1)
ACCAG365638AG365639
length727992
length of high quality
(start - end)
308 (44 - 351)---
definitionCHROMAT_FILE: MSMg01no168_h09.b1 PHD_FILE: MSMg01no168_h09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:37:43 2005CHROMAT_FILE: MSMg01no168_h09.g1 PHD_FILE: MSMg01no168_h09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:37:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAAGGTATCTGATTTATTCTTGGCTTTCAGATACCTACCTTTAGGCAT
TCCCCCACTTTTGTTGGGATGAAGTAGACATTTAGAAGTACAGCCTGACA
TTTAGTAAACCTTGTGAAACACTTACCACAATCAAGCCCATATGCCTACC
AATCTTAAAGTGAATAGTCACTTCAGGAGTCTCTCTTAGAAAAAAATCCT
AGTACTGTATGGGATAGGGTGGCAGTTACCAGCTTGGGGATCAGAGTAAT
AGAAAGATGTTGGTCTTTAAGTTCAGAGTTTGTGTTTATGAAATGTGAGT
ATTTTCNATAGNTTACCANAACGTTCCCCGTAAAGATTATATCAATTAAT
GATGNAGATGACCACCTGATATAAAGAAACATTACCTACGCTTTTGTTTT
ATTCTCTTTTCAACTTCTGTTTCTCTATTCAAACCCTTACTGAATATTAC
CAACAAACATGTACTCACAATACTTACCTAACCACGCTATTTTCTTCAGC
CTACCGATAACCTGAAGGTCACCTTAACGACTACGTCTTCAAACACAGTC
ATTTGATACATTATCCCACACTTTTCCTACCAATATATCATCAACCCCCT
CTATTATTGTTATCCTCTTTGGTCCACCCGATACCCCCATGCTCACCAAC
GCGATTAGACTCCACAACTCCAAATAN
GCCCTGGTGCGGTCCGGCCCTGAGCTCGCTCGCACATTTCCTAGGTGGAA
NCACTATANGANANNGGATCCCNGCGGNNAATTCTCTTNGNTAAGTATTT
TNCCNTCCATTNNTAATCTTGGGTTTTTGGCCGNCAATCACGCTTGGCTC
GGTGATATTGGGGCCTTATATTAAACACAGTATGGGGCCTTGGTATTCGC
CAGAATATCCCNTCTAAGAACNNTTTTATACATGAAGAGGGCATGGTTGG
NNAATTTTGATCAAGAAGGCCTTTNNTTCAGNCACTCTAATGGGAGATGG
GATCATGGNNTGTTTTTCTCTAATTAAGTTTGGTTCTATATCGGTCTACA
CTCACATCTAATGGGTATGTTTCATATAGTTGNNNAACCACTCCCTGTCA
TTCTCCTCAATATATTCTCCTCTACTTTGGTATCTATGGGTGGTACTGAC
TGTATTATTCGCTTTTTTANAGTTAAAAATTTCCCNAAANACCGANAACC
CCCTGTTTTAGTTTTTTATTTTTGTTGTGTTTTTTNTGTTTTTTCTCCCC
CCCCCAAAAAAAAAAAAAAAAAAAAATAGGTGTGGGGGGGGGGGTTGGGT
TTTTTATCTTTGTGACACTCATTCTTCTCCCTTCTTTCCATTTAAGTGGG
TGTCTTTACGGCACCTTCTAATACCCCCTAATTTGTGCACTGTACTTCTT
ATTTTCCCCACTCCCCCCTTTTTATACTTCTCATTCTTTGTACTTCTATC
CCCTCTTGCCCGCGCACCCTTAATTATAATTTAATACGCGTCCCGACGTG
TTGCCGGATCCTCTATAACGATATTTATTTACTTTTATTTTCTCTCTCCC
ACCCCACTCCCCACATATTTTCGTTTTATATACCCATTGCACCCCCGCCT
CTTAATAGCCACTAATCATATTACGTCGCCGCNCCTACTACGCACATATA
CGCCCGTGTTTTCTTATCTTTTCTCTCTTCTTTCAACTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no168_h09.b1 MSMg01no168_h09.b1 CHROMAT_FILE:
MSMg01no168_h09.b1 PHD_FILE: MSMg01no168_h09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:37:43 2005
         (308 letters)



>mm_chr12_34232939_34233646
          Length = 708

 Score =  518 bits (268), Expect = e-151
 Identities = 295/304 (97%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaaggtatctgatttattcttggctttcagatacctacctttaggcattccccca 64
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 508 gaattcaaggtatctgatttattcttggctttaagatacctacctttaggcattccccca 449

                                                                       
Query: 65  cttttgttgggatgaagtagacatttagaagtacagcctgacatttagtaaaccttgtga 124
           | |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 448 cctttgttgggatgaagtaggcatttagaagtacagcctgacatttagtaaaccttgtga 389

                                                                       
Query: 125 aacacttaccacaatcaagcccatatgcctaccaatcttaaagtgaatagtcacttcagg 184
           ||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 aatgcttaccacaatcaagcccatatgcctaccaatcttaaagtgaatagtcacttcagg 329

                                                                       
Query: 185 agtctctcttagaaaaaaatcctagtactgtatgggatagggtggcagttaccagcttgg 244
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 328 agtctctcttagaaaaaaatccaagtactgtatgggatagggtggcagttaccagcttgg 269

                                                                       
Query: 245 ggatcagagtaatagaaagatgttggtctttaagttcagagtttgtgtttatgaaatgtg 304
           ||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||
Sbjct: 268 ggatcagagtaatagaaagatgttggtccagaagttcagagtttgtgtttatgaaatgtg 209

               
Query: 305 agta 308
           ||||
Sbjct: 208 agta 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 308
Length of database: 708
Length adjustment: 9
Effective length of query: 299
Effective length of database: 699
Effective search space:   209001
Effective search space used:   209001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)