Query= MSMg01no169_o01.b1 MSMg01no169_o01.b1 CHROMAT_FILE:
MSMg01no169_o01.b1 PHD_FILE: MSMg01no169_o01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:39:41 2005
(315 letters)
>mm_chr12_55328184_55328901
Length = 718
Score = 580 bits (300), Expect = e-170
Identities = 308/312 (98%), Gaps = 3/312 (0%)
Strand = Plus / Minus
Query: 5 gaattctcgcctgtgaagctgaatgtccttctggaaattatgaagataataacacattga 64
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 516 gaattctcgcctgtgaagctgaatgtccttctggaaattatgaagacaataacacattga 457
Query: 65 accattaggcaaggtcagttcctaaaattttaaataaagactttatttgcctatagtcaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 accattaggcaaggtcagttcctaaaattttaaataaagactttatttgcctatagtcaa 397
Query: 125 tgaaatgtgcctgttagaaaaaaaa---tttctcataattattattagtagaccccatag 181
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 396 tgaaatgtgcctgttagaaaaaaaattttttctcataattattattagtagaccccatag 337
Query: 182 gataatttttatcaatttgcccctcattctatcactccaggatatacaacataatctaaa 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 gataatttttatcaatttgcccctcattctatcactccaggatatacaacataatctaaa 277
Query: 242 tctcccatagagaaagccaatttacatccagttatagctgcataaaaaccagctggacta 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 tctcccatagagaaagccaatttacatccagttatagctgcataaaaaccagctggacta 217
Query: 302 tgatctgaatga 313
||||||||||||
Sbjct: 216 tgatctgaatga 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 718
Length adjustment: 9
Effective length of query: 306
Effective length of database: 709
Effective search space: 216954
Effective search space used: 216954
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no169_o01.g1 MSMg01no169_o01.g1 CHROMAT_FILE:
MSMg01no169_o01.g1 PHD_FILE: MSMg01no169_o01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:39:41 2005
(292 letters)
>mm_chr12_55232827_55233519
Length = 693
Score = 499 bits (258), Expect = e-146
Identities = 282/290 (97%), Gaps = 1/290 (0%)
Strand = Plus / Plus
Query: 1 agcagccaactgattgggcaaaagcagaaatccgtgaactgtaaggtcgttagcaaccta 60
|||| |||| ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 201 agcaaccaattgattgggcaaaagcagaaatccgtgaactggaaggtcgttagcaaccta 260
Query: 61 gtctgaaaagaaaagagtaggaagaaaagagaa-ttacatttactttatggaagtgtcag 119
|||||||||||||| |||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct: 261 gtctgaaaagaaaaaagtaggaagaaaagagaacttacatttattttatggaagtgtcag 320
Query: 120 aaacaaaccatggaacaaagagcttatttgaaaaccaaacaacacaacaagaaaaaacta 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaacaaaccatggaacaaagagcttatttgaaaaccaaacaacacaacaagaaaaaacta 380
Query: 180 agtgtttctaaagctggtggaaaagcaaacaaaacctaaaccatcaccaacaaaacccca 239
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 381 agtgtttctaaagctggtggaaaagcaaacaaaaactaaaccatcaccaacaaaacccca 440
Query: 240 caggtttaaaagctcaatgaacttcaactagtccaaagaaggacacgaag 289
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taggtttaaaagctcaatgaacttcaactagtccaaagaaggacacgaag 490
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 693
Length adjustment: 9
Effective length of query: 283
Effective length of database: 684
Effective search space: 193572
Effective search space used: 193572
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
