BAC Information

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BAC

Clone NameMSMg01-170F06
Chromosome12 (Build37)
Map Location 32,894,242 - 32,894,552
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043065, LOC100043514, EG629667, LOC100043068, Lamb1-1, Dld, LOC668786, Slc26a3, Cbll1, Slc26a4, LOC100043531, Bcap29, Dus4l, LOC100043081, Gpr22, Hbp1, Prkar2b, Pik3cg
Downstream gene2010109K11Rik, LOC100043548, Pbef1, LOC100043553, 4933406C10Rik, Sypl, LOC100043109, 1110049B09Rik, Atxn7l4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-170F06.T7 (MSMg01no170_f06.b1)MSMg01-170F06.TJ (MSMg01no170_f06.g1)
ACCAG366931AG366932
length723782
length of high quality
(start - end)
318 (36 - 353)---
definitionCHROMAT_FILE: MSMg01no170_f06.b1 PHD_FILE: MSMg01no170_f06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:40:15 2005CHROMAT_FILE: MSMg01no170_f06.g1 PHD_FILE: MSMg01no170_f06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:40:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTCTT
AAAGCAGTCCTATATTTTCCAAGTAACCTCAATTCCTTCTACAACCCTAA
GCATAGCCAGTCGTCCCCTGTTCCAGGGGTCTCTATACCAGGGCTTATTC
TCCCCCACTAGGCTGTCAAGGATTCCAGCTGGAACAGCAAGAAGGATAGA
GGAGCCTCACACAGCCCTCCGAAGCACAGCCTCATGAGTTTCTTTGAGCT
TCGTGGATATCGAGATAGAGTCTCTGACCTGTTCTATTTCCTCTCACACA
GTCCTTGTGATGGTTCGTACAGATTGTAAACGTGACAGGATCTGGAATCT
TAGATATACTCTNTGCGATNCCTATAAGCCTGTCTCTAGACTGGCTTAGG
TGAAGTATATAAAGAACAAATCTAAACATGGGAGCTGCAGTTCTGGATGG
GAGAAAGCCAGAGAACGGCAGGCCCTGTTCATCTGCTTCCTGATGGCAGA
TGCAATGTTAGCAGCTGCTCTATGATCCTGCCGGCATGACTTTCCTGCCA
CGATGCACTGTACCCTCAAATTGGGAACCAAAATAACTCCCGTTCTGCCT
TAAATTGCTTCTGCTGGATGCTTTGTCACAGCAACAAGGCACACAGTACA
TATAAGATAAAGTCCCTTTGGGTCTTAGCTTTAAAATAGTGCTTTAAGAG
TCAATAGCAGTGTTCAAGTCTTG
GAAANAAGGAGGGGGGGGGGGNNCNGCCTNTCCCCCCAAACNNNCAAAGA
AGAAGGGGGAGGCCGGGGNCGCNGGGTGGGGAACGANNNGNNNNNNNNNG
GTGCAAAAAAAGGGGGNNNNNNNGNNNNNNNNNNNGGNNNNNNNNNNNNT
TTTTGNGCAAAAAAAAAGGGGGNNNNNNNNAGNANNNAGGGGAANAGAAN
GAGGAGAGGGAGAAGGAGGGAGAAGGGAGAGAAAAGGGANANAAGGGAAG
AAAAAGGGGGGAAGAGAGGGGAAGAGGGAGAGAGGGATGAGAGAGAGAGA
GAGAGAGAGAAAGANAGAGAGAGAGAGAGAGAGAAAGAGAGAGAGAGATG
TTTGTGGGTGTGAGGGAGAGGGAGGGGAAGAGAGGGGAGGGGGTGGTGTT
GGGCCCCCCCGCGCCGCGGGAGGGGAGGGGGAGGGGGGGGGGGGGGGGGG
AGGGGGGGGAAAAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGGAGGGGG
GGGAGGGAAAGAGGAGAAGGAGAAGGGAGGGGGAGGAGGGAGCGAGGGAA
GTGAGAGAGGGAGAGGGGAAAGGAGGGAAAGAGGGGGGAGGAGGGGAGGG
GGGGGGAGAGAGAAGGGGGGGGGGGAAGAGGGGAGGGGGGGGAGGGGGGG
GGAAGGGGGGGGAGAGGGAGGGGGGAGGGGGAGGGGGAGGGGAGAGGGAG
GGGAGGGAGGGGAGGGGGGTGGTGAAAGAGGGAGGGGGAGAGAGGGGGGA
GGAGGAGGAGGGGGGGGAGGGGAGGGAGGCGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no170_f06.b1 MSMg01no170_f06.b1 CHROMAT_FILE:
MSMg01no170_f06.b1 PHD_FILE: MSMg01no170_f06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:40:15 2005
         (318 letters)



>mm_chr12_32894038_32894755
          Length = 718

 Score =  594 bits (307), Expect = e-174
 Identities = 310/311 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttcttaaagcagtcctatattttccaagtaacctcaattccttctacaacccta 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttcttaaagcagtcctatattttccaagtaacctcaattccttctacaacccta 264

                                                                       
Query: 65  agcatagccagtcgtcccctgttccaggggtctctataccagggcttattctcccccact 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agcatagccagtcgtcccctgttccaggggtctctataccagggcttattctcccccact 324

                                                                       
Query: 125 aggctgtcaaggattccagctggaacagcaagaaggatagaggagcctcacacagccctc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aggctgtcaaggattccagctggaacagcaagaaggatagaggagcctcacacagccctc 384

                                                                       
Query: 185 cgaagcacagcctcatgagtttctttgagcttcgtggatatcgagatagagtctctgacc 244
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 385 cgaagcacagcctcatgagtttctttgagcttcgtggatattgagatagagtctctgacc 444

                                                                       
Query: 245 tgttctatttcctctcacacagtccttgtgatggttcgtacagattgtaaacgtgacagg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgttctatttcctctcacacagtccttgtgatggttcgtacagattgtaaacgtgacagg 504

                      
Query: 305 atctggaatct 315
           |||||||||||
Sbjct: 505 atctggaatct 515


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space:   219081
Effective search space used:   219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)