BAC Information

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BAC

Clone NameMSMg01-171C16
Chromosome12 (Build37)
Map Location 15,328,996 - 15,329,283
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043256, Map1lc3-ps7, LOC668492, LOC100042426
Downstream geneLOC217409, Trib2, LOC100043268, EG432636, LOC100043273
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-171C16.T7 (MSMg01no171_c16.b1)MSMg01-171C16.TJ (MSMg01no171_c16.g1)
ACCAG367496AG367497
length655745
length of high quality
(start - end)
186 (71 - 256)288 (75 - 362)
definitionCHROMAT_FILE: MSMg01no171_c16.b1 PHD_FILE: MSMg01no171_c16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:41:19 2005CHROMAT_FILE: MSMg01no171_c16.g1 PHD_FILE: MSMg01no171_c16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:41:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTATTTTTTCCCCAGGGGGCAGACNANAGNAGAAGAAAGNCCCCCACACA
ANCACNTAGTTTTAAACGAAGTCACTGCCACATACAGGAATTTACAATGG
TTTAGGAAGTAGATCTGGCTGTAGTTTAAACAGGAACTATAGTATTGCAT
TATTCATACCTAGGTTAGATAGAGCTGAACTCCCTAATTAGAATTTTGGC
TTGGTAATGAAAGCCCTTGCTCTGGGAGTGTTATGACCTCATATCTGGCA
TCTAAGATTTGTGTTGTCCNNAGAGAGAGCNGACNNCGNCNCAGNTGTTA
TATTTTCTCGNCCCCGCCCCCCTTTGNGTATGCATTCCTCTGTTTTGTGT
AAGAGCTATAAAAANTACTATAACCTCAATGTACCTTGGCTGAGATGTCA
CCTAACTTCCTTATTTTCTTCTGTTTTAAAAATCTGATGCTCTCTTTGAG
AAATTACATTCAGATACAGCACTCTCTCTGTGTCAGCGCCTGTTTGACAT
CTCGCCAACTCTTTGTTCACCTGATTGCCGAAATCCTGGTTCCCCTCAGG
ATGGGGGACTGATTGAGTCAATTTTATGGCAGGTTTTTTTTTTTTTGCTT
CTGCCACAGGATAATGAAAACCTTCAAATCCACAGCAGCGCCCACTACAG
TTTGC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCATGCAGTATCCTCCAGTAGATGAA
AGGAGAGATAGTGAGGTGTGAGCAACGAAAGGGGCGGGATTTGTCAAGAC
TGAACTCAAGGGGATCCAAACTGTGTGGCACAGTGGCAGATAAACATGTC
ATCACAATTGGCATTTTGTGTGATTCCTATTTTGGGATTTTAAAAAGGTG
AAAAACATCATCCCACAAAACTACAAACCACCTCTCTGAATCAGTTCTTT
TTGGAGAGAAGCCAGCATTGATGGGTATGTTCATGTACTTTCACAGTCTG
ATTGCCACAAGCAANCCATANAACTCNTNTCGNNNTCAATTCCTGGATGT
GATTATTAATAAAATATGACCCCATAAAGAAGAAATAAAACCNNGNGTGC
GGGGGTGTCCTGCATGCAGTTAAATATTTTACATGTCAAAATGGAATTAG
GTTATTAAAAATAAATGCAAATATAATCCAAGATAAACAGTTTTATTTCA
AAGGGTATTTTATAATCTTACATAATGAAATTATTGCCTATATGCAGTAG
CCTTAAAATTAAATTTAAACCATAGCCTTAAAATCAAATGTATGAACTAA
CTGCATTAACAATCTAATACTTCTTATGCTATAACTGAGAGAACACTACC
CCAGGAATCTGAAGAATGGAAAGTATTTGGCATGGACCCCACCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no171_c16.g1 MSMg01no171_c16.g1 CHROMAT_FILE:
MSMg01no171_c16.g1 PHD_FILE: MSMg01no171_c16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:41:19 2005
         (288 letters)



>mm_chr12_15328796_15329483
          Length = 688

 Score =  526 bits (272), Expect = e-154
 Identities = 284/288 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcatgcagtatcctccagtagatgaaaggagagatagtgaggtgtgagcaacgaaagggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 tcatgcagtatcctccagtagatgaaaggagagatagtgaggtgtgagcaaggaaagggg 260

                                                                       
Query: 61  cgggatttgtcaagactgaactcaaggggatccaaactgtgtggcacagtggcagataaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cgggatttgtcaagactgaactcaaggggatccaaactgtgtggcacagtggcagataaa 320

                                                                       
Query: 121 catgtcatcacaattggcattttgtgtgattcctattttgggattttaaaaaggtgaaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 catgtcatcacaattggcattttgtgtgattcctattttgggattttaaaaaggtgaaaa 380

                                                                       
Query: 181 acatcatcccacaaaactacaaaccacctctctgaatcagttctttttggagagaagcca 240
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 381 acatcatcccacaaaactacaaaccacctctccgaatcagttctttttggagagaagcca 440

                                                           
Query: 241 gcattgatgggtatgttcatgtactttcacagtctgattgccacaagc 288
           ||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 441 gcattgatggggaagttcatgtactttcacagtctgattgccacaagc 488


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)