BAC Information

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BAC

Clone NameMSMg01-171D21
Chromosome12 (Build37)
Map Location 38,709,651 - 38,709,938
singlet/doubletsinglet
Overlap geneDgkb
Upstream geneMeox2, A530016O06Rik, LOC100043139
Downstream geneLOC668824, LOC100043142, Etv1, LOC100043145
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-171D21.T7 (MSMg01no171_d21.b1)MSMg01-171D21.TJ (MSMg01no171_d21.g1)
ACCAG367549AG367550
length745748
length of high quality
(start - end)
193 (130 - 322)288 (71 - 358)
definitionCHROMAT_FILE: MSMg01no171_d21.b1 PHD_FILE: MSMg01no171_d21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:41:25 2005CHROMAT_FILE: MSMg01no171_d21.g1 PHD_FILE: MSMg01no171_d21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:41:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGCGGAGCGGCGGA
ANNCNANGAAGCTTTTTCACAAAAAGGAGAAAANGAAACAAGNCAGGCCC
ATTACTGGCCCCACCAGGNCATCTCTCCTTTTCCTAATTGTCTTTTATTT
AAACATTTACACTGTATCTGGTAGGTTTATTTATTCCTCCCTATTTATTA
CTTGTGTTTTGCTCTTTAATCCTAAACATGCAACAAATTGTCTCCAAAAC
TCTTAGATTTTTGTTAAAACCACCTAGTGCTTTCTTATATTGTTAGGCTA
TCTGGAGTTTCTGCCTGAACATCCTTTTTTTTTCTCCNTCNCNCACNNNC
NAGNNNCNGGANATTTTATATTCTTAAAACGNGNAACCCCCTTTTCNGAN
NCNNCCACACNNCCNGGGCCACCNGGAANNNNAAAGNNAAAACCGNGAGG
GAGGCGGCAAACANNAGGACNNCAGGAAACNCCNAAGNCACCNAAGAAAG
GNGNAGACANACCNCAGAGCACCNNCCNAANCACAGGACCGCACCCNAAG
GGAAGGGCCAGCNACACCAACCAACNCCCAGNCCGGNAACACAGCCAAAC
NAACAGGGAAAGAACCGCCNCAGGAAAACAACAACAANAAACCCAAAGCC
GCGACNAGGCAAGCGTTTTTATTATTGGCTTTTGGCTCATTGGTAATGAC
AAGAGATTTAAAAGAGAGTTTTTGAGACATTCATTTTAACAGATT
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXATAATCAGGTAAGAAACAAGGAGATGATGT
TTGTTGTATTCTCTAGGTATAACTTTGATTTAATTTTGCTTTGGGGGGTT
TAATGAGATCATTCATTCTTCTCCACAGCCATACTCTACTACCCCATAGC
ACACAAAACATTATTTATTACTTGACATGCATGTTAAAAAAATTAACAAT
AGTTTAAGAACATATTAAAGACTACTCATTATGGCATTTAAAATAACAAT
TTGTTGAGGAAAGATTAAAAAACTAGATATTAAGAAATCTGTTTCAATAT
GGTACTTCCCGGATGGTCTACCGAACAATCCCAATTTCTAATGTTGTATT
ATAAGATAAAGACTGCGATCTTTAAATGTAAAATAAGCTGATGGTATGTA
CTGATGTTGAGCAAAGTGTGCTACTTCTAATCATCACATCCGGAATATAT
TTTCAGTTACTCTTATTAATGAGAATTTATTACACAAGATTGCACTCTAA
TCACTTTTCCTCTTAATTAGCTGGGAAACTCCTGATAGAGTAATTAACAT
TTCTTTTGTTGTCTTAATGATATGAGAAAGGACAGAAAACTTGATGATCT
TGAAATCTCAACTAGTTTTTATAGAGTTCAGAATTAATCATCAATTTGTC
ATCTCATAAATTATAATAAATAAACCCTTACTGCACATATATTGAACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no171_d21.g1 MSMg01no171_d21.g1 CHROMAT_FILE:
MSMg01no171_d21.g1 PHD_FILE: MSMg01no171_d21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:41:25 2005
         (288 letters)



>mm_chr12_38709451_38710138
          Length = 688

 Score =  549 bits (284), Expect = e-161
 Identities = 287/288 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ataatcaggtaagaaacaaggagatgatgtttgttgtattctctaggtataactttgatt 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 488 ataatcaggtaagaaacaaggagatgatgtttgttgtattctctaggtataaatttgatt 429

                                                                       
Query: 61  taattttgctttggggggtttaatgagatcattcattcttctccacagccatactctact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 taattttgctttggggggtttaatgagatcattcattcttctccacagccatactctact 369

                                                                       
Query: 121 accccatagcacacaaaacattatttattacttgacatgcatgttaaaaaaattaacaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 accccatagcacacaaaacattatttattacttgacatgcatgttaaaaaaattaacaat 309

                                                                       
Query: 181 agtttaagaacatattaaagactactcattatggcatttaaaataacaatttgttgagga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 agtttaagaacatattaaagactactcattatggcatttaaaataacaatttgttgagga 249

                                                           
Query: 241 aagattaaaaaactagatattaagaaatctgtttcaatatggtacttc 288
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 aagattaaaaaactagatattaagaaatctgtttcaatatggtacttc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)