Query= MSMg01no171_k05.b1 MSMg01no171_k05.b1 CHROMAT_FILE:
MSMg01no171_k05.b1 PHD_FILE: MSMg01no171_k05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:41:54 2005
(616 letters)
>mm_chr12_49566677_49567692
Length = 1016
Score = 1083 bits (560), Expect = 0.0
Identities = 602/620 (97%), Gaps = 9/620 (1%)
Strand = Plus / Plus
Query: 5 gaattcagaaggataacttgtagagttttagattattgttaatataccggtaaaggtaag 64
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 198 gaattcagaaggataacttgtagagttttagattattgttaatataccggtaaaagtaag 257
Query: 65 atgtaatatgatgagtacatttcaacaacactagattgttgaaaagaagtaaaaagtgaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 atgtaatatgatgagtacatttcaacaacactagattgttgaaaagaagtaaaaagtgaa 317
Query: 125 caggcaagaatggagatgctaatgaagaaggtagtctatataccaatagagagagcacaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 caggcaagaatggagatgctaatgaagaaggtagtctatataccaatagagagagcacaa 377
Query: 185 aacaagcaacatgtgcattataataaaacaacaccgtgaaaatagaaagttgattcaaga 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 378 aacaagcaacatgtgcattataataaaacaacaccgtgaaaatagaaagttgatttaaga 437
Query: 245 tcaaggataacaccatagagaatagccaagctcagtaagaaattccactgtggatttcca 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 tcaaggataacaccatagagaatagccaagctcagtaagaaattccactgtggatttcca 497
Query: 305 gaactttcttccaattattttcccagagcgcccgc-gattgacttacagtccttcagcaa 363
|||||||||||| |||||||||||||||| || | ||||||| ||||||||||||||||
Sbjct: 498 gaactttcttcccattattttcccagagcatcc-ctgattgacctacagtccttcagcaa 556
Query: 364 gtttaaccttcggaaagtcatttcccttcagctgtttttttt-------ataaaggagga 416
|||||||||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 557 gtttaacctttggaaagtcatttcccttcagctgtttttttttttttttataaaggagga 616
Query: 417 tttataaggagatacacctcatgaagcatcaggcagatttacttcctggacaacatgata 476
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 617 tttataaggagatacacctcatgaagtatcaggcagatttacttcctggacaacatgata 676
Query: 477 aattttgtctttttgttgttgggttggtggaaagaaaacacataacttgtccaagtctgt 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 aattttgtctttttgttgttgggttggtggaaagaaaacacataacttgtccaagtctgt 736
Query: 537 gaaactcaggattaatagcagagattttctctctgatagtgggttgaagatttgtgaagt 596
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 737 gaaactcaggattaatagcagagattttctatctgatagtgggttgaagatttgtgaagt 796
Query: 597 caatttccaaactaattaac 616
||||||||||||||||||||
Sbjct: 797 caatttccaaactaattaac 816
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 616
Length of database: 1016
Length adjustment: 10
Effective length of query: 606
Effective length of database: 1006
Effective search space: 609636
Effective search space used: 609636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no171_k05.g1 MSMg01no171_k05.g1 CHROMAT_FILE:
MSMg01no171_k05.g1 PHD_FILE: MSMg01no171_k05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:41:54 2005
(287 letters)
>mm_chr12_49576638_49577324
Length = 687
Score = 536 bits (277), Expect = e-157
Identities = 283/285 (99%)
Strand = Plus / Minus
Query: 1 agcatttgaaagcaagtattattttgaaaaatgggagaaatacttgactatctgagttag 60
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 326 agcatttgaaagcaagtattattttgaagaatgggagaaatacttgactatctgagttag 267
Query: 61 aagggttgccaaaatgttttggaaacctagttgatgctggagcacaaatttatagtgaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 aagggttgccaaaatgttttggaaacctagttgatgctggagcacaaatttatagtgaca 207
Query: 121 tctggatttaactgcacaggtgcaaaggaagacagataattagattcgacctgatctagg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 tctggatttaactgcacaggtgcaaaggaagacagataattagattcgacctgatctagg 147
Query: 181 attttgccaaacatgtgctgaaaggacacagcgacaaaacactatacaaatttagcagat 240
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 146 attttgccaaacatgtgctgaaaggacacagcgacaaaacactatacacatttagcagat 87
Query: 241 cttggtgaaaataaagcacttattatccttctgaaatgactggga 285
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86 cttggtgaaaataaagcacttattatccttctgaaatgactggga 42
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space: 188484
Effective search space used: 188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
